RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 PDE3BQ13370 1112 aa16.91■□□□□ 0.3
NPHP4-203ENST00000378169 CDK13Q14004 1512 aaKnown RBP16.91■□□□□ 0.3
NPHP4-203ENST00000378169 MINK1Q8N4C8 1332 aaPredicted RBP16.91■□□□□ 0.3
NPHP4-203ENST00000378169 BCL2L13Q9BXK5 485 aa16.91■□□□□ 0.3
NPHP4-203ENST00000378169 VGFO15240 615 aaPredicted RBP16.91■□□□□ 0.3
NPHP4-203ENST00000378169 APAF1O14727 1248 aa16.9■□□□□ 0.3
NPHP4-203ENST00000378169 APBB1O00213 710 aa16.9■□□□□ 0.3
NPHP4-203ENST00000378169 TROQ12816 1431 aaPredicted RBP16.89■□□□□ 0.3
NPHP4-203ENST00000378169 TMEM132EQ6IEE7 984 aa16.88■□□□□ 0.29
NPHP4-203ENST00000378169 NAIPQ13075 1403 aa16.88■□□□□ 0.29
NPHP4-203ENST00000378169 ITPRIPQ8IWB1 547 aa16.88■□□□□ 0.29
NPHP4-203ENST00000378169 EXOC6Q8TAG9 804 aa16.88■□□□□ 0.29
NPHP4-203ENST00000378169 SYNJ2O15056 1496 aa16.88■□□□□ 0.29
NPHP4-203ENST00000378169 MIA2Q96PC5 1412 aa16.87■□□□□ 0.29
NPHP4-203ENST00000378169 SMC4Q9NTJ3 1288 aa16.87■□□□□ 0.29
NPHP4-203ENST00000378169 RTF1Q92541 710 aaKnown RBP16.87■□□□□ 0.29
NPHP4-203ENST00000378169 CFAP70Q5T0N1 1121 aa16.87■□□□□ 0.29
NPHP4-203ENST00000378169 CNTLNQ9NXG0 1405 aa16.86■□□□□ 0.29
NPHP4-203ENST00000378169 EHBP1L1Q8N3D4 1523 aa16.86■□□□□ 0.29
NPHP4-203ENST00000378169 SPRYD3Q8NCJ5 442 aa16.86■□□□□ 0.29
NPHP4-203ENST00000378169 EPRSP07814 1512 aaKnown RBP16.85■□□□□ 0.29
NPHP4-203ENST00000378169 CCDC184Q52MB2 194 aa16.85■□□□□ 0.29
NPHP4-203ENST00000378169 CENPJQ9HC77 1338 aaPredicted RBP16.85■□□□□ 0.29
NPHP4-203ENST00000378169 FAM69CQ0P6D2 419 aa16.85■□□□□ 0.29
NPHP4-203ENST00000378169 TPRNQ4KMQ1 711 aa16.85■□□□□ 0.29
NPHP4-203ENST00000378169 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
NPHP4-203ENST00000378169 PCF11O94913 1555 aaKnown RBP16.85■□□□□ 0.29
NPHP4-203ENST00000378169 ARHGAP5Q13017 1502 aa16.85■□□□□ 0.29
NPHP4-203ENST00000378169 C9orf84Q5VXU9 1444 aa16.84■□□□□ 0.29
NPHP4-203ENST00000378169 CHMP4BQ9H444 224 aaKnown RBP16.84■□□□□ 0.29
NPHP4-203ENST00000378169 ELL2O00472 640 aaPredicted RBP16.84■□□□□ 0.29
NPHP4-203ENST00000378169 TCERG1O14776 1098 aaKnown RBP16.84■□□□□ 0.29
NPHP4-203ENST00000378169 IPO8O15397 1037 aaKnown RBP16.84■□□□□ 0.29
NPHP4-203ENST00000378169 NGDNQ8NEJ9 315 aaKnown RBP16.83■□□□□ 0.28
NPHP4-203ENST00000378169 KIAA0586Q9BVV6 1533 aa16.83■□□□□ 0.28
NPHP4-203ENST00000378169 NCLP19338 710 aaKnown RBP16.82■□□□□ 0.28
NPHP4-203ENST00000378169 EVC2Q86UK5 1308 aa16.82■□□□□ 0.28
NPHP4-203ENST00000378169 URB2Q14146 1524 aaKnown RBP16.82■□□□□ 0.28
NPHP4-203ENST00000378169 RRP1P56182 461 aaKnown RBP16.82■□□□□ 0.28
NPHP4-203ENST00000378169 DAPK1P53355 1430 aa16.82■□□□□ 0.28
NPHP4-203ENST00000378169 CASC1Q6TDU7 716 aa16.81■□□□□ 0.28
NPHP4-203ENST00000378169 CGNL1Q0VF96 1302 aa16.81■□□□□ 0.28
NPHP4-203ENST00000378169 OS9Q13438 667 aaPredicted RBP16.81■□□□□ 0.28
NPHP4-203ENST00000378169 EID1Q9Y6B2 187 aa16.81■□□□□ 0.28
NPHP4-203ENST00000378169 PLB1Q6P1J6 1458 aa16.8■□□□□ 0.28
NPHP4-203ENST00000378169 KIAA1107Q9UPP5 1409 aa16.8■□□□□ 0.28
NPHP4-203ENST00000378169 LTV1Q96GA3 475 aaPredicted RBP16.8■□□□□ 0.28
NPHP4-203ENST00000378169 CRBNQ96SW2 442 aa16.79■□□□□ 0.28
NPHP4-203ENST00000378169 RWDD1Q9H446 243 aaPredicted RBP16.79■□□□□ 0.28
NPHP4-203ENST00000378169 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.78■□□□□ 0.28
NPHP4-203ENST00000378169 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
NPHP4-203ENST00000378169 GOLGA6L22H0YM25 854 aa16.78■□□□□ 0.28
NPHP4-203ENST00000378169 LAMC3Q9Y6N6 1575 aa16.77■□□□□ 0.28
NPHP4-203ENST00000378169 ZNF608Q9ULD9 1512 aaPredicted RBP16.77■□□□□ 0.28
NPHP4-203ENST00000378169 SCAPERQ9BY12 1400 aa16.77■□□□□ 0.28
NPHP4-203ENST00000378169 CDCA7LQ96GN5 454 aa16.77■□□□□ 0.27
NPHP4-203ENST00000378169 ADAMTS8Q9UP79 889 aa16.77■□□□□ 0.27
NPHP4-203ENST00000378169 COG6Q9Y2V7 657 aa16.77■□□□□ 0.27
NPHP4-203ENST00000378169 HSP90AB1P08238 724 aaKnown RBP16.76■□□□□ 0.27
NPHP4-203ENST00000378169 C11orf95C9JLR9 678 aaPredicted RBP16.76■□□□□ 0.27
NPHP4-203ENST00000378169 CALD1Q05682 793 aaKnown RBP16.76■□□□□ 0.27
NPHP4-203ENST00000378169 SLKQ9H2G2 1235 aaPredicted RBP16.76■□□□□ 0.27
NPHP4-203ENST00000378169 HECW1Q76N89 1606 aa16.76■□□□□ 0.27
NPHP4-203ENST00000378169 IQGAP2Q13576 1575 aa16.75■□□□□ 0.27
NPHP4-203ENST00000378169 CABP2Q9NPB3 220 aa16.75■□□□□ 0.27
NPHP4-203ENST00000378169 AMPHP49418 695 aa16.75■□□□□ 0.27
NPHP4-203ENST00000378169 GGNBP2Q9H3C7 697 aa16.75■□□□□ 0.27
NPHP4-203ENST00000378169 RAPGEF3O95398 923 aa16.74■□□□□ 0.27
NPHP4-203ENST00000378169 E9PSI1 815 aa16.73■□□□□ 0.27
NPHP4-203ENST00000378169 ARHGEF11O15085 1522 aa16.73■□□□□ 0.27
NPHP4-203ENST00000378169 SUPT6HQ7KZ85 1726 aaKnown RBP16.73■□□□□ 0.27
NPHP4-203ENST00000378169 SLC4A10Q6U841 1118 aa16.72■□□□□ 0.27
NPHP4-203ENST00000378169 RTN4Q9NQC3 1192 aaKnown RBP16.72■□□□□ 0.27
NPHP4-203ENST00000378169 PMFBP1Q8TBY8 1022 aa16.71■□□□□ 0.27
NPHP4-203ENST00000378169 HSCBQ8IWL3 235 aa16.71■□□□□ 0.26
NPHP4-203ENST00000378169 COG3Q96JB2 828 aa16.7■□□□□ 0.26
NPHP4-203ENST00000378169 STAC3Q96MF2 364 aa16.7■□□□□ 0.26
NPHP4-203ENST00000378169 IPO9Q96P70 1041 aaKnown RBP16.7■□□□□ 0.26
NPHP4-203ENST00000378169 ABCC5O15440 1437 aa16.7■□□□□ 0.26
NPHP4-203ENST00000378169 CSB-PGBD3P0DP91 1061 aa16.7■□□□□ 0.26
NPHP4-203ENST00000378169 SLC12A5Q9H2X9 1139 aa16.7■□□□□ 0.26
NPHP4-203ENST00000378169 MFAP1P55081 439 aaKnown RBP16.69■□□□□ 0.26
NPHP4-203ENST00000378169 TAOK2Q9UL54 1235 aa16.69■□□□□ 0.26
NPHP4-203ENST00000378169 PDE4AP27815 886 aa16.69■□□□□ 0.26
NPHP4-203ENST00000378169 KCNJ4P48050 445 aa16.69■□□□□ 0.26
NPHP4-203ENST00000378169 MTHFSP49914 203 aa16.68■□□□□ 0.26
NPHP4-203ENST00000378169 STK31Q9BXU1 1019 aa16.68■□□□□ 0.26
NPHP4-203ENST00000378169 ANKRD30BQ9BXX2 1392 aa16.68■□□□□ 0.26
NPHP4-203ENST00000378169 GRIN2AQ12879 1464 aa16.68■□□□□ 0.26
NPHP4-203ENST00000378169 DEKP35659 375 aaKnown RBP16.68■□□□□ 0.26
NPHP4-203ENST00000378169 PNISRQ8TF01 805 aaKnown RBP16.68■□□□□ 0.26
NPHP4-203ENST00000378169 SLC4A3P48751 1232 aa16.67■□□□□ 0.26
NPHP4-203ENST00000378169 TRIM44Q96DX7 344 aaPredicted RBP16.67■□□□□ 0.26
NPHP4-203ENST00000378169 BRD4O60885 1362 aaPredicted RBP16.67■□□□□ 0.26
NPHP4-203ENST00000378169 DIAPH1O60610 1272 aaKnown RBP16.66■□□□□ 0.26
NPHP4-203ENST00000378169 PPP2R1AP30153 589 aa16.66■□□□□ 0.26
NPHP4-203ENST00000378169 MAP3K1Q13233 1512 aa16.66■□□□□ 0.26
NPHP4-203ENST00000378169 ROCK1Q13464 1354 aa16.66■□□□□ 0.26
NPHP4-203ENST00000378169 RIPK4P57078 832 aa16.66■□□□□ 0.26
NPHP4-203ENST00000378169 CUL7Q14999 1698 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms