RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 GORABQ5T7V8 394 aa17.97■□□□□ 0.47
TRAF1-201ENST00000373887 GBP4Q96PP9 640 aa17.97■□□□□ 0.47
TRAF1-201ENST00000373887 MINK1Q8N4C8 1332 aaPredicted RBP17.96■□□□□ 0.47
TRAF1-201ENST00000373887 STK31Q9BXU1 1019 aa17.95■□□□□ 0.46
TRAF1-201ENST00000373887 SMARCA4P51532 1647 aa17.95■□□□□ 0.46
TRAF1-201ENST00000373887 RRP7AQ9Y3A4 280 aaKnown RBP17.95■□□□□ 0.46
TRAF1-201ENST00000373887 GTF2E1P29083 439 aaPredicted RBP17.95■□□□□ 0.46
TRAF1-201ENST00000373887 RUSC2Q8N2Y8 1516 aa17.94■□□□□ 0.46
TRAF1-201ENST00000373887 RAD54L2Q9Y4B4 1467 aa17.94■□□□□ 0.46
TRAF1-201ENST00000373887 GOLGA6L1Q8N7Z2 621 aa17.93■□□□□ 0.46
TRAF1-201ENST00000373887 RBM19Q9Y4C8 960 aaKnown RBP17.93■□□□□ 0.46
TRAF1-201ENST00000373887 FOXD4L1Q9NU39 408 aa17.93■□□□□ 0.46
TRAF1-201ENST00000373887 CLUAP1Q96AJ1 413 aa17.92■□□□□ 0.46
TRAF1-201ENST00000373887 IPO8O15397 1037 aaKnown RBP17.92■□□□□ 0.46
TRAF1-201ENST00000373887 NOL8Q76FK4 1167 aaKnown RBP17.92■□□□□ 0.46
TRAF1-201ENST00000373887 NGEFQ8N5V2 710 aa17.92■□□□□ 0.46
TRAF1-201ENST00000373887 TPM4P67936 248 aa17.92■□□□□ 0.46
TRAF1-201ENST00000373887 SMC4Q9NTJ3 1288 aa17.91■□□□□ 0.46
TRAF1-201ENST00000373887 CALD1Q05682 793 aaKnown RBP17.91■□□□□ 0.46
TRAF1-201ENST00000373887 SYTL4Q96C24 671 aaPredicted RBP17.91■□□□□ 0.46
TRAF1-201ENST00000373887 RSPH4AQ5TD94 716 aa17.9■□□□□ 0.46
TRAF1-201ENST00000373887 MFAP1P55081 439 aaKnown RBP17.89■□□□□ 0.45
TRAF1-201ENST00000373887 ELL2O00472 640 aaPredicted RBP17.89■□□□□ 0.45
TRAF1-201ENST00000373887 RASSF8Q8NHQ8 419 aa17.88■□□□□ 0.45
TRAF1-201ENST00000373887 PRDM2Q13029 1718 aa17.88■□□□□ 0.45
TRAF1-201ENST00000373887 AQRO60306 1485 aaKnown RBP eCLIP17.88■□□□□ 0.45
TRAF1-201ENST00000373887 FRAT2O75474 233 aaPredicted RBP17.88■□□□□ 0.45
TRAF1-201ENST00000373887 CCDC144AA2RUR9 1427 aa17.88■□□□□ 0.45
TRAF1-201ENST00000373887 HTATSF1O43719 755 aaKnown RBP17.87■□□□□ 0.45
TRAF1-201ENST00000373887 CFAP44Q96MT7 982 aa17.87■□□□□ 0.45
TRAF1-201ENST00000373887 SYAP1Q96A49 352 aaPredicted RBP17.87■□□□□ 0.45
TRAF1-201ENST00000373887 TIMELESSQ9UNS1 1208 aa17.87■□□□□ 0.45
TRAF1-201ENST00000373887 RALBP1Q15311 655 aa17.87■□□□□ 0.45
TRAF1-201ENST00000373887 PTMSP20962 102 aa17.86■□□□□ 0.45
TRAF1-201ENST00000373887 KLHL34Q8N239 644 aa17.86■□□□□ 0.45
TRAF1-201ENST00000373887 FBXO3Q9UK99 471 aa17.86■□□□□ 0.45
TRAF1-201ENST00000373887 GOLGA6L3A6NEY3 463 aa17.86■□□□□ 0.45
TRAF1-201ENST00000373887 TRIM6-TRIM34B2RNG4 842 aa17.86■□□□□ 0.45
TRAF1-201ENST00000373887 PHF23Q9BUL5 403 aaPredicted RBP17.86■□□□□ 0.45
TRAF1-201ENST00000373887 ST20-MTHFSA0A0A6YYL1 179 aa17.85■□□□□ 0.45
TRAF1-201ENST00000373887 COG3Q96JB2 828 aa17.85■□□□□ 0.45
TRAF1-201ENST00000373887 FOXD4L5Q5VV16 416 aaPredicted RBP17.85■□□□□ 0.45
TRAF1-201ENST00000373887 FOXD4L4Q8WXT5 416 aaPredicted RBP17.85■□□□□ 0.45
TRAF1-201ENST00000373887 RCAN3Q9UKA8 241 aa17.85■□□□□ 0.45
TRAF1-201ENST00000373887 PSME1Q06323 249 aa17.85■□□□□ 0.45
TRAF1-201ENST00000373887 GAPVD1Q14C86 1478 aa17.84■□□□□ 0.45
TRAF1-201ENST00000373887 PANK3Q9H999 370 aa17.84■□□□□ 0.45
TRAF1-201ENST00000373887 NUTM2GQ5VZR2 741 aa17.84■□□□□ 0.45
TRAF1-201ENST00000373887 FGD5Q6ZNL6 1462 aa17.84■□□□□ 0.45
TRAF1-201ENST00000373887 C1orf141Q5JVX7 400 aa17.84■□□□□ 0.45
TRAF1-201ENST00000373887 NECTIN2Q92692 538 aa17.83■□□□□ 0.45
TRAF1-201ENST00000373887 VGFO15240 615 aaPredicted RBP17.83■□□□□ 0.44
TRAF1-201ENST00000373887 PATL2C9JE40 543 aaKnown RBP17.82■□□□□ 0.44
TRAF1-201ENST00000373887 ZNF644Q9H582 1327 aaPredicted RBP17.81■□□□□ 0.44
TRAF1-201ENST00000373887 VPS53Q5VIR6 699 aa17.8■□□□□ 0.44
TRAF1-201ENST00000373887 TOMM22Q9NS69 142 aa17.8■□□□□ 0.44
TRAF1-201ENST00000373887 EIF2S2P20042 333 aaKnown RBP17.79■□□□□ 0.44
TRAF1-201ENST00000373887 RWDD1Q9H446 243 aaPredicted RBP17.79■□□□□ 0.44
TRAF1-201ENST00000373887 WWC1Q8IX03 1113 aa17.79■□□□□ 0.44
TRAF1-201ENST00000373887 BCL2L13Q9BXK5 485 aa17.79■□□□□ 0.44
TRAF1-201ENST00000373887 CCER2I3L3R5 266 aa17.79■□□□□ 0.44
TRAF1-201ENST00000373887 CEP89Q96ST8 783 aa17.79■□□□□ 0.44
TRAF1-201ENST00000373887 PES1O00541 588 aaKnown RBP17.78■□□□□ 0.44
TRAF1-201ENST00000373887 EVC2Q86UK5 1308 aa17.77■□□□□ 0.44
TRAF1-201ENST00000373887 TPM3P06753 285 aa17.77■□□□□ 0.44
TRAF1-201ENST00000373887 ATF3P18847 181 aa17.75■□□□□ 0.43
TRAF1-201ENST00000373887 GPATCH3Q96I76 525 aa17.75■□□□□ 0.43
TRAF1-201ENST00000373887 CCAR2Q8N163 923 aaKnown RBP17.75■□□□□ 0.43
TRAF1-201ENST00000373887 LMOD3Q0VAK6 560 aa17.74■□□□□ 0.43
TRAF1-201ENST00000373887 TTC5Q8N0Z6 440 aa17.74■□□□□ 0.43
TRAF1-201ENST00000373887 CCDC34Q96HJ3 373 aa17.74■□□□□ 0.43
TRAF1-201ENST00000373887 TCERG1O14776 1098 aaKnown RBP17.73■□□□□ 0.43
TRAF1-201ENST00000373887 MARCH6O60337 910 aa17.73■□□□□ 0.43
TRAF1-201ENST00000373887 TEFQ10587 303 aa17.73■□□□□ 0.43
TRAF1-201ENST00000373887 SETQ01105 290 aaPredicted RBP17.73■□□□□ 0.43
TRAF1-201ENST00000373887 FBXW7Q969H0 707 aa17.73■□□□□ 0.43
TRAF1-201ENST00000373887 CENPJQ9HC77 1338 aaPredicted RBP17.73■□□□□ 0.43
TRAF1-201ENST00000373887 UACAQ9BZF9 1416 aa17.72■□□□□ 0.43
TRAF1-201ENST00000373887 USP35Q9P2H5 1018 aa17.72■□□□□ 0.43
TRAF1-201ENST00000373887 CSPP1Q1MSJ5 1256 aa17.72■□□□□ 0.43
TRAF1-201ENST00000373887 CGNL1Q0VF96 1302 aa17.71■□□□□ 0.43
TRAF1-201ENST00000373887 RAD21O60216 631 aa17.7■□□□□ 0.42
TRAF1-201ENST00000373887 FOXD4L6Q3SYB3 417 aaPredicted RBP17.7■□□□□ 0.42
TRAF1-201ENST00000373887 FOXD4L3Q6VB84 417 aaPredicted RBP17.7■□□□□ 0.42
TRAF1-201ENST00000373887 TMEM132EQ6IEE7 984 aa17.7■□□□□ 0.42
TRAF1-201ENST00000373887 HMMRO75330 724 aa17.69■□□□□ 0.42
TRAF1-201ENST00000373887 SF3A1Q15459 793 aaKnown RBP17.69■□□□□ 0.42
TRAF1-201ENST00000373887 TPD52L1Q16890 204 aaPredicted RBP17.69■□□□□ 0.42
TRAF1-201ENST00000373887 PMFBP1Q8TBY8 1022 aa17.69■□□□□ 0.42
TRAF1-201ENST00000373887 NLRP13Q86W25 1043 aa17.69■□□□□ 0.42
TRAF1-201ENST00000373887 AFAP1Q8N556 730 aa17.68■□□□□ 0.42
TRAF1-201ENST00000373887 CHMP4AQ9BY43 222 aa17.67■□□□□ 0.42
TRAF1-201ENST00000373887 HSP90AA2PQ14568 343 aaPredicted RBP17.67■□□□□ 0.42
TRAF1-201ENST00000373887 NESP48681 1621 aa17.67■□□□□ 0.42
TRAF1-201ENST00000373887 KIF16BQ96L93 1317 aa17.67■□□□□ 0.42
TRAF1-201ENST00000373887 CABP2Q9NPB3 220 aa17.66■□□□□ 0.42
TRAF1-201ENST00000373887 IGF1RP08069 1367 aa17.66■□□□□ 0.42
TRAF1-201ENST00000373887 PLIN1O60240 522 aa17.65■□□□□ 0.42
TRAF1-201ENST00000373887 HMOX1P09601 288 aa17.65■□□□□ 0.42
TRAF1-201ENST00000373887 RILPL2Q969X0 211 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms