RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 DCAF8Q5TAQ9 597 aa12.06□□□□□ -0.48
ATG4A-203ENST00000372232 DISP1Q96F81 1524 aa12.06□□□□□ -0.48
ATG4A-203ENST00000372232 MAGI1Q96QZ7 1491 aaPredicted RBP12.06□□□□□ -0.48
ATG4A-203ENST00000372232 PAK3O75914 559 aaPredicted RBP12.06□□□□□ -0.48
ATG4A-203ENST00000372232 WASHC2CQ9Y4E1 1318 aa12.06□□□□□ -0.48
ATG4A-203ENST00000372232 SIN3AQ96ST3 1273 aa12.05□□□□□ -0.48
ATG4A-203ENST00000372232 GPBP1L1Q9HC44 474 aaPredicted RBP12.05□□□□□ -0.48
ATG4A-203ENST00000372232 SEMA3EO15041 775 aa12.05□□□□□ -0.48
ATG4A-203ENST00000372232 CDK13Q14004 1512 aaKnown RBP12.04□□□□□ -0.48
ATG4A-203ENST00000372232 KIAA0556O60303 1618 aa12.04□□□□□ -0.48
ATG4A-203ENST00000372232 PTPN23Q9H3S7 1636 aa12.04□□□□□ -0.48
ATG4A-203ENST00000372232 CHMP7Q8WUX9 453 aaPredicted RBP12.04□□□□□ -0.48
ATG4A-203ENST00000372232 KCNH8Q96L42 1107 aa12.04□□□□□ -0.48
ATG4A-203ENST00000372232 SPDYE2BA6NHP3 402 aa12.03□□□□□ -0.48
ATG4A-203ENST00000372232 SPDYE6P0CI01 402 aa12.03□□□□□ -0.48
ATG4A-203ENST00000372232 SPDYE2Q495Y8 402 aa12.03□□□□□ -0.48
ATG4A-203ENST00000372232 NAIPQ13075 1403 aa12.03□□□□□ -0.48
ATG4A-203ENST00000372232 TCOF1Q13428 1488 aaKnown RBP12.03□□□□□ -0.48
ATG4A-203ENST00000372232 SYNJ2O15056 1496 aa12.03□□□□□ -0.48
ATG4A-203ENST00000372232 ARID3CA6NKF2 412 aa12.02□□□□□ -0.49
ATG4A-203ENST00000372232 CHD1O14646 1710 aa12.02□□□□□ -0.49
ATG4A-203ENST00000372232 UACAQ9BZF9 1416 aa12.02□□□□□ -0.49
ATG4A-203ENST00000372232 MIA2Q96PC5 1412 aa12.01□□□□□ -0.49
ATG4A-203ENST00000372232 NUP153P49790 1475 aaKnown RBP12□□□□□ -0.49
ATG4A-203ENST00000372232 CEP170Q5SW79 1584 aa11.99□□□□□ -0.49
ATG4A-203ENST00000372232 RYDENQ9NUL5 291 aaKnown RBP11.98□□□□□ -0.49
ATG4A-203ENST00000372232 NUP160Q12769 1436 aa11.97□□□□□ -0.49
ATG4A-203ENST00000372232 ZMYND10O75800 440 aa11.97□□□□□ -0.49
ATG4A-203ENST00000372232 RAPGEF6Q8TEU7 1601 aa11.97□□□□□ -0.49
ATG4A-203ENST00000372232 AKNAQ7Z591 1439 aa11.96□□□□□ -0.49
ATG4A-203ENST00000372232 PPP1R15AO75807 674 aaPredicted RBP11.96□□□□□ -0.49
ATG4A-203ENST00000372232 RRP7BPQ9NSQ0 103 aa11.96□□□□□ -0.49
ATG4A-203ENST00000372232 USP35Q9P2H5 1018 aa11.96□□□□□ -0.49
ATG4A-203ENST00000372232 CHIC2Q9UKJ5 165 aa11.96□□□□□ -0.49
ATG4A-203ENST00000372232 JPH4Q96JJ6 628 aa11.95□□□□□ -0.5
ATG4A-203ENST00000372232 TESPA1A2RU30 521 aaPredicted RBP11.94□□□□□ -0.5
ATG4A-203ENST00000372232 FGD1P98174 961 aa11.94□□□□□ -0.5
ATG4A-203ENST00000372232 IPO9Q96P70 1041 aaKnown RBP11.94□□□□□ -0.5
ATG4A-203ENST00000372232 CARMIL2Q6F5E8 1435 aa11.94□□□□□ -0.5
ATG4A-203ENST00000372232 PLB1Q6P1J6 1458 aa11.93□□□□□ -0.5
ATG4A-203ENST00000372232 BRPF3Q9ULD4 1205 aa11.92□□□□□ -0.5
ATG4A-203ENST00000372232 TONSLQ96HA7 1378 aa11.92□□□□□ -0.5
ATG4A-203ENST00000372232 PDE4CQ08493 712 aa11.92□□□□□ -0.5
ATG4A-203ENST00000372232 AAMPQ13685 434 aa11.91□□□□□ -0.5
ATG4A-203ENST00000372232 GCC2Q8IWJ2 1684 aa11.91□□□□□ -0.5
ATG4A-203ENST00000372232 TROQ12816 1431 aaPredicted RBP11.91□□□□□ -0.5
ATG4A-203ENST00000372232 PRG4Q92954 1404 aaPredicted RBP11.91□□□□□ -0.5
ATG4A-203ENST00000372232 CLASP1Q7Z460 1538 aa11.91□□□□□ -0.5
ATG4A-203ENST00000372232 ARHGEF1Q92888 912 aaKnown RBP11.9□□□□□ -0.5
ATG4A-203ENST00000372232 ROCK1Q13464 1354 aa11.9□□□□□ -0.5
ATG4A-203ENST00000372232 DAPK1P53355 1430 aa11.9□□□□□ -0.5
ATG4A-203ENST00000372232 NECTIN2Q92692 538 aa11.89□□□□□ -0.51
ATG4A-203ENST00000372232 PPP4R2Q9NY27 417 aa11.89□□□□□ -0.51
ATG4A-203ENST00000372232 ZNF644Q9H582 1327 aaPredicted RBP11.89□□□□□ -0.51
ATG4A-203ENST00000372232 ABCC5O15440 1437 aa11.89□□□□□ -0.51
ATG4A-203ENST00000372232 FAM43AQ8N2R8 423 aa11.88□□□□□ -0.51
ATG4A-203ENST00000372232 TRIM52Q96A61 297 aa11.88□□□□□ -0.51
ATG4A-203ENST00000372232 SGIP1Q9BQI5 828 aa11.88□□□□□ -0.51
ATG4A-203ENST00000372232 KDM6BO15054 1643 aa11.88□□□□□ -0.51
ATG4A-203ENST00000372232 DENND4BO75064 1496 aaPredicted RBP11.88□□□□□ -0.51
ATG4A-203ENST00000372232 RBM10P98175 930 aaKnown RBP11.88□□□□□ -0.51
ATG4A-203ENST00000372232 MKRN3Q13064 507 aaKnown RBP11.88□□□□□ -0.51
ATG4A-203ENST00000372232 APBB1O00213 710 aa11.87□□□□□ -0.51
ATG4A-203ENST00000372232 CCER2I3L3R5 266 aa11.87□□□□□ -0.51
ATG4A-203ENST00000372232 ANP32AP39687 249 aaKnown RBP11.87□□□□□ -0.51
ATG4A-203ENST00000372232 DNMT1P26358 1616 aaKnown RBP11.87□□□□□ -0.51
ATG4A-203ENST00000372232 PYGBP11216 843 aa11.86□□□□□ -0.51
ATG4A-203ENST00000372232 MPHOSPH9Q99550 1183 aa11.86□□□□□ -0.51
ATG4A-203ENST00000372232 GPATCH8Q9UKJ3 1502 aaKnown RBP11.86□□□□□ -0.51
ATG4A-203ENST00000372232 FAM212AQ96EL1 285 aa11.86□□□□□ -0.51
ATG4A-203ENST00000372232 CFDP1Q9UEE9 299 aaPredicted RBP11.86□□□□□ -0.51
ATG4A-203ENST00000372232 PDIA4P13667 645 aaKnown RBP11.85□□□□□ -0.51
ATG4A-203ENST00000372232 NEFMP07197 916 aa11.85□□□□□ -0.51
ATG4A-203ENST00000372232 ABCA8O94911 1581 aa11.84□□□□□ -0.51
ATG4A-203ENST00000372232 KDM5BQ9UGL1 1544 aa11.84□□□□□ -0.51
ATG4A-203ENST00000372232 A0A0U1RQG5 324 aaPredicted RBP11.84□□□□□ -0.51
ATG4A-203ENST00000372232 DDX10Q13206 875 aaKnown RBP11.84□□□□□ -0.51
ATG4A-203ENST00000372232 KDM4CQ9H3R0 1056 aa11.84□□□□□ -0.51
ATG4A-203ENST00000372232 ADCY10Q96PN6 1610 aa11.83□□□□□ -0.52
ATG4A-203ENST00000372232 CAMSAP2Q08AD1 1489 aa11.83□□□□□ -0.52
ATG4A-203ENST00000372232 PLEKHD1A6NEE1 506 aa11.83□□□□□ -0.52
ATG4A-203ENST00000372232 E2F4Q16254 413 aa11.83□□□□□ -0.52
ATG4A-203ENST00000372232 HIRIP3Q9BW71 556 aaPredicted RBP11.83□□□□□ -0.52
ATG4A-203ENST00000372232 KIF14Q15058 1648 aa11.82□□□□□ -0.52
ATG4A-203ENST00000372232 BARGINQ6ZT62 677 aa11.82□□□□□ -0.52
ATG4A-203ENST00000372232 ATP10BO94823 1461 aa11.82□□□□□ -0.52
ATG4A-203ENST00000372232 RRP9O43818 475 aaKnown RBP11.82□□□□□ -0.52
ATG4A-203ENST00000372232 CCDC9Q9Y3X0 531 aaKnown RBP11.82□□□□□ -0.52
ATG4A-203ENST00000372232 RASEFQ8IZ41 740 aa11.81□□□□□ -0.52
ATG4A-203ENST00000372232 ITSN2Q9NZM3 1697 aa11.81□□□□□ -0.52
ATG4A-203ENST00000372232 RIMBP3CA6NJZ7 1639 aa11.81□□□□□ -0.52
ATG4A-203ENST00000372232 RIMBP3BA6NNM3 1639 aa11.81□□□□□ -0.52
ATG4A-203ENST00000372232 RIMBP3Q9UFD9 1639 aa11.81□□□□□ -0.52
ATG4A-203ENST00000372232 ZNF777Q9ULD5 760 aaPredicted RBP11.8□□□□□ -0.52
ATG4A-203ENST00000372232 ZBTB7CA1YPR0 619 aa11.8□□□□□ -0.52
ATG4A-203ENST00000372232 PTPRGP23470 1445 aa11.8□□□□□ -0.52
ATG4A-203ENST00000372232 NCOA1Q15788 1441 aa11.8□□□□□ -0.52
ATG4A-203ENST00000372232 SHROOM2Q13796 1616 aa11.79□□□□□ -0.52
ATG4A-203ENST00000372232 CHRM1P11229 460 aaPredicted RBP11.79□□□□□ -0.52
ATG4A-203ENST00000372232 ANKRD30BQ9BXX2 1392 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms