RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 PTPRGP23470 1445 aa24.4■■□□□ 1.5
PTP4A3-202ENST00000349124 SHANK2Q9UPX8 1470 aa24.39■■□□□ 1.5
PTP4A3-202ENST00000349124 MYBBP1AQ9BQG0 1328 aaKnown RBP24.38■■□□□ 1.49
PTP4A3-202ENST00000349124 RALBP1Q15311 655 aa24.34■■□□□ 1.49
PTP4A3-202ENST00000349124 ARHGEF12Q9NZN5 1544 aa24.34■■□□□ 1.49
PTP4A3-202ENST00000349124 LRPPRCP42704 1394 aaKnown RBP24.34■■□□□ 1.49
PTP4A3-202ENST00000349124 KDM5DQ9BY66 1539 aa24.31■■□□□ 1.48
PTP4A3-202ENST00000349124 CC2D1BQ5T0F9 858 aaKnown RBP24.31■■□□□ 1.48
PTP4A3-202ENST00000349124 BRD4O60885 1362 aaPredicted RBP24.31■■□□□ 1.48
PTP4A3-202ENST00000349124 FAM135AQ9P2D6 1515 aa24.3■■□□□ 1.48
PTP4A3-202ENST00000349124 PER1O15534 1290 aaPredicted RBP24.3■■□□□ 1.48
PTP4A3-202ENST00000349124 CCDC144AA2RUR9 1427 aa24.3■■□□□ 1.48
PTP4A3-202ENST00000349124 PLA2R1Q13018 1463 aa24.29■■□□□ 1.48
PTP4A3-202ENST00000349124 CCDC141Q6ZP82 1450 aa24.29■■□□□ 1.48
PTP4A3-202ENST00000349124 PRAG1Q86YV5 1406 aa24.28■■□□□ 1.48
PTP4A3-202ENST00000349124 PAK3O75914 559 aaPredicted RBP24.28■■□□□ 1.48
PTP4A3-202ENST00000349124 CDCA7LQ96GN5 454 aa24.28■■□□□ 1.48
PTP4A3-202ENST00000349124 SAMD9LQ8IVG5 1584 aa24.28■■□□□ 1.48
PTP4A3-202ENST00000349124 EXOC6Q8TAG9 804 aa24.27■■□□□ 1.48
PTP4A3-202ENST00000349124 NLRP13Q86W25 1043 aa24.26■■□□□ 1.47
PTP4A3-202ENST00000349124 BCL11AQ9H165 835 aa24.26■■□□□ 1.47
PTP4A3-202ENST00000349124 TESK2Q96S53 571 aa24.25■■□□□ 1.47
PTP4A3-202ENST00000349124 RSPH4AQ5TD94 716 aa24.24■■□□□ 1.47
PTP4A3-202ENST00000349124 PANK3Q9H999 370 aa24.24■■□□□ 1.47
PTP4A3-202ENST00000349124 DISP3Q9P2K9 1392 aa24.24■■□□□ 1.47
PTP4A3-202ENST00000349124 ARHGEF5Q12774 1597 aa24.23■■□□□ 1.47
PTP4A3-202ENST00000349124 KTN1Q86UP2 1357 aaKnown RBP24.23■■□□□ 1.47
PTP4A3-202ENST00000349124 RRP1P56182 461 aaKnown RBP24.23■■□□□ 1.47
PTP4A3-202ENST00000349124 RCAN3Q9UKA8 241 aa24.22■■□□□ 1.47
PTP4A3-202ENST00000349124 PLEKHH2Q8IVE3 1493 aa24.22■■□□□ 1.47
PTP4A3-202ENST00000349124 SYCP2Q9BX26 1530 aa24.21■■□□□ 1.47
PTP4A3-202ENST00000349124 PARD3Q8TEW0 1356 aa24.21■■□□□ 1.47
PTP4A3-202ENST00000349124 A2MP01023 1474 aa24.2■■□□□ 1.46
PTP4A3-202ENST00000349124 CDC42BPBQ9Y5S2 1711 aa24.2■■□□□ 1.46
PTP4A3-202ENST00000349124 PLIN1O60240 522 aa24.18■■□□□ 1.46
PTP4A3-202ENST00000349124 NOP58Q9Y2X3 529 aaKnown RBP24.18■■□□□ 1.46
PTP4A3-202ENST00000349124 ARHGAP5Q13017 1502 aa24.17■■□□□ 1.46
PTP4A3-202ENST00000349124 NBR1Q14596 966 aa24.15■■□□□ 1.46
PTP4A3-202ENST00000349124 GPRASP1Q5JY77 1395 aa24.13■■□□□ 1.45
PTP4A3-202ENST00000349124 TTC37Q6PGP7 1564 aa24.12■■□□□ 1.45
PTP4A3-202ENST00000349124 TRPM1Q7Z4N2 1603 aa24.12■■□□□ 1.45
PTP4A3-202ENST00000349124 PREX2Q70Z35 1606 aa24.12■■□□□ 1.45
PTP4A3-202ENST00000349124 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.11■■□□□ 1.451e-6■■■■■ 26.8
PTP4A3-202ENST00000349124 E9PCH4 1651 aa24.1■■□□□ 1.45
PTP4A3-202ENST00000349124 SKAP1Q86WV1 359 aa24.1■■□□□ 1.45
PTP4A3-202ENST00000349124 TMF1P82094 1093 aa24.09■■□□□ 1.45
PTP4A3-202ENST00000349124 ERBINQ96RT1 1412 aa24.09■■□□□ 1.45
PTP4A3-202ENST00000349124 COL17A1Q9UMD9 1497 aaPredicted RBP24.08■■□□□ 1.44
PTP4A3-202ENST00000349124 ERCC6L2Q5T890 1561 aa24.07■■□□□ 1.44
PTP4A3-202ENST00000349124 ANP32AP39687 249 aaKnown RBP24.06■■□□□ 1.44
PTP4A3-202ENST00000349124 IPO9Q96P70 1041 aaKnown RBP24.06■■□□□ 1.44
PTP4A3-202ENST00000349124 PDE3BQ13370 1112 aa24.06■■□□□ 1.44
PTP4A3-202ENST00000349124 NPM2Q86SE8 214 aaKnown RBP24.06■■□□□ 1.44
PTP4A3-202ENST00000349124 ADAMTS8Q9UP79 889 aa24.06■■□□□ 1.44
PTP4A3-202ENST00000349124 AFAP1Q8N556 730 aa24.04■■□□□ 1.44
PTP4A3-202ENST00000349124 WASHC2CQ9Y4E1 1318 aa24.01■■□□□ 1.43
PTP4A3-202ENST00000349124 PRDM15P57071 1507 aaPredicted RBP24■■□□□ 1.43
PTP4A3-202ENST00000349124 EFCAB2Q5VUJ9 269 aa24■■□□□ 1.43
PTP4A3-202ENST00000349124 UNC13BO14795 1591 aa24■■□□□ 1.43
PTP4A3-202ENST00000349124 C20orf194Q5TEA3 1177 aa24■■□□□ 1.43
PTP4A3-202ENST00000349124 CRBNQ96SW2 442 aa24■■□□□ 1.43
PTP4A3-202ENST00000349124 TRAPPC8Q9Y2L5 1435 aa24■■□□□ 1.43
PTP4A3-202ENST00000349124 DEKP35659 375 aaKnown RBP23.99■■□□□ 1.43
PTP4A3-202ENST00000349124 ZBTB47Q9UFB7 747 aaPredicted RBP23.99■■□□□ 1.43
PTP4A3-202ENST00000349124 PDE4AP27815 886 aa23.97■■□□□ 1.43
PTP4A3-202ENST00000349124 MAST1Q9Y2H9 1570 aa23.96■■□□□ 1.43
PTP4A3-202ENST00000349124 MAGI2Q86UL8 1455 aa23.96■■□□□ 1.43
PTP4A3-202ENST00000349124 KNSTRNQ9Y448 316 aa23.96■■□□□ 1.43
PTP4A3-202ENST00000349124 PPP2R1AP30153 589 aa23.96■■□□□ 1.43
PTP4A3-202ENST00000349124 IQGAP3Q86VI3 1631 aa23.94■■□□□ 1.42
PTP4A3-202ENST00000349124 PLCH2O75038 1416 aa23.94■■□□□ 1.42
PTP4A3-202ENST00000349124 DUOX2Q9NRD8 1548 aa23.94■■□□□ 1.42
PTP4A3-202ENST00000349124 TCERG1O14776 1098 aaKnown RBP23.94■■□□□ 1.42
PTP4A3-202ENST00000349124 BLMP54132 1417 aaPredicted RBP23.93■■□□□ 1.42
PTP4A3-202ENST00000349124 AMER1Q5JTC6 1135 aaPredicted RBP23.93■■□□□ 1.42
PTP4A3-202ENST00000349124 CHD1O14646 1710 aa23.92■■□□□ 1.42
PTP4A3-202ENST00000349124 SPAG9O60271 1321 aaKnown RBP23.92■■□□□ 1.42
PTP4A3-202ENST00000349124 ATP10AO60312 1499 aa23.92■■□□□ 1.42
PTP4A3-202ENST00000349124 ABCC2Q92887 1545 aa23.91■■□□□ 1.42
PTP4A3-202ENST00000349124 WDR7Q9Y4E6 1490 aa23.91■■□□□ 1.42
PTP4A3-202ENST00000349124 PLEKHH1Q9ULM0 1364 aa23.9■■□□□ 1.42
PTP4A3-202ENST00000349124 BACH2Q9BYV9 841 aa23.9■■□□□ 1.42
PTP4A3-202ENST00000349124 PLXNC1O60486 1568 aa23.89■■□□□ 1.42
PTP4A3-202ENST00000349124 MYO5CQ9NQX4 1742 aa23.89■■□□□ 1.41
PTP4A3-202ENST00000349124 WDR43Q15061 677 aaKnown RBP eCLIP23.88■■□□□ 1.41
PTP4A3-202ENST00000349124 CCDC146Q8IYE0 955 aa23.88■■□□□ 1.41
PTP4A3-202ENST00000349124 MYT1LQ9UL68 1186 aa23.86■■□□□ 1.41
PTP4A3-202ENST00000349124 DUSP27Q5VZP5 1158 aa23.86■■□□□ 1.41
PTP4A3-202ENST00000349124 LAMC1P11047 1609 aa23.84■■□□□ 1.41
PTP4A3-202ENST00000349124 EIF2AK4Q9P2K8 1649 aaKnown RBP23.83■■□□□ 1.41
PTP4A3-202ENST00000349124 CFAP70Q5T0N1 1121 aa23.83■■□□□ 1.4
PTP4A3-202ENST00000349124 KIF3BO15066 747 aa23.82■■□□□ 1.4
PTP4A3-202ENST00000349124 SHROOM2Q13796 1616 aa23.82■■□□□ 1.4
PTP4A3-202ENST00000349124 SPINK5Q9NQ38 1064 aaPredicted RBP23.81■■□□□ 1.4
PTP4A3-202ENST00000349124 LAS1LQ9Y4W2 734 aaKnown RBP23.81■■□□□ 1.4
PTP4A3-202ENST00000349124 ZMYM4Q5VZL5 1548 aa23.8■■□□□ 1.4
PTP4A3-202ENST00000349124 MS4A1P11836 297 aa23.8■■□□□ 1.4
PTP4A3-202ENST00000349124 INSRP06213 1382 aa23.79■■□□□ 1.4
PTP4A3-202ENST00000349124 GOLGA2Q08379 1002 aa23.78■■□□□ 1.4
PTP4A3-202ENST00000349124 ZNF521Q96K83 1311 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms