RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 CFAP43Q8NDM7 1665 aa6.01□□□□□ -1.45
CSMD3-203ENST00000343508 KIF7Q2M1P5 1343 aa6.01□□□□□ -1.45
CSMD3-203ENST00000343508 ST20-MTHFSA0A0A6YYL1 179 aa6.01□□□□□ -1.45
CSMD3-203ENST00000343508 PDS5BQ9NTI5 1447 aa6.01□□□□□ -1.45
CSMD3-203ENST00000343508 BACH2Q9BYV9 841 aa6.01□□□□□ -1.45
CSMD3-203ENST00000343508 IGF1RP08069 1367 aa6.01□□□□□ -1.45
CSMD3-203ENST00000343508 PEG3Q9GZU2 1588 aa6.01□□□□□ -1.45
CSMD3-203ENST00000343508 PTPN23Q9H3S7 1636 aa6□□□□□ -1.45
CSMD3-203ENST00000343508 NRDCO43847 1150 aa6□□□□□ -1.45
CSMD3-203ENST00000343508 MFAP1P55081 439 aaKnown RBP6□□□□□ -1.45
CSMD3-203ENST00000343508 MORC1Q86VD1 984 aa6□□□□□ -1.45
CSMD3-203ENST00000343508 MTERF4Q7Z6M4 381 aaKnown RBP6□□□□□ -1.45
CSMD3-203ENST00000343508 PLEKHH2Q8IVE3 1493 aa6□□□□□ -1.45
CSMD3-203ENST00000343508 WASHC2CQ9Y4E1 1318 aa6□□□□□ -1.45
CSMD3-203ENST00000343508 PLIN1O60240 522 aa6□□□□□ -1.45
CSMD3-203ENST00000343508 VSIG10Q8N0Z9 540 aa6□□□□□ -1.45
CSMD3-203ENST00000343508 PAK3O75914 559 aaPredicted RBP6□□□□□ -1.45
CSMD3-203ENST00000343508 ANO8Q9HCE9 1232 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-203ENST00000343508 SLC4A3P48751 1232 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 ITPRIPQ8IWB1 547 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 CC2D2AQ9P2K1 1620 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 U2SURPO15042 1029 aaKnown RBP5.99□□□□□ -1.45
CSMD3-203ENST00000343508 FANCD2Q9BXW9 1451 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 CHMP5Q9NZZ3 219 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 MAPKBP1O60336 1514 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 SMC4Q9NTJ3 1288 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 HMGXB3Q12766 1538 aa5.99□□□□□ -1.45
CSMD3-203ENST00000343508 NPM1P06748 294 aaKnown RBP eCLIP5.98□□□□□ -1.45
CSMD3-203ENST00000343508 MRE11P49959 708 aa5.98□□□□□ -1.45
CSMD3-203ENST00000343508 ST18O60284 1047 aa5.98□□□□□ -1.45
CSMD3-203ENST00000343508 CSPP1Q1MSJ5 1256 aa5.98□□□□□ -1.45
CSMD3-203ENST00000343508 DRC7Q8IY82 874 aa5.98□□□□□ -1.45
CSMD3-203ENST00000343508 AQRO60306 1485 aaKnown RBP eCLIP5.98□□□□□ -1.45
CSMD3-203ENST00000343508 MAP7D2Q96T17 732 aa5.98□□□□□ -1.45
CSMD3-203ENST00000343508 IL27Q8NEV9 243 aa5.97□□□□□ -1.45
CSMD3-203ENST00000343508 DDX49Q9Y6V7 483 aaKnown RBP5.97□□□□□ -1.45
CSMD3-203ENST00000343508 NINLQ9Y2I6 1382 aa5.97□□□□□ -1.45
CSMD3-203ENST00000343508 ESF1Q9H501 851 aaKnown RBP5.97□□□□□ -1.45
CSMD3-203ENST00000343508 PANK3Q9H999 370 aa5.97□□□□□ -1.45
CSMD3-203ENST00000343508 ISY1Q9ULR0 285 aaKnown RBP5.97□□□□□ -1.45
CSMD3-203ENST00000343508 GOLGA6L4A6NEF3 574 aa5.97□□□□□ -1.45
CSMD3-203ENST00000343508 PRKCSHP14314 528 aaPredicted RBP5.97□□□□□ -1.45
CSMD3-203ENST00000343508 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.97□□□□□ -1.45
CSMD3-203ENST00000343508 CFTRP13569 1480 aa5.97□□□□□ -1.45
CSMD3-203ENST00000343508 TPM2P07951 284 aa5.96□□□□□ -1.46
CSMD3-203ENST00000343508 GAPVD1Q14C86 1478 aa5.96□□□□□ -1.46
CSMD3-203ENST00000343508 DDX19BQ9UMR2 479 aa5.96□□□□□ -1.46
CSMD3-203ENST00000343508 KIF21AQ7Z4S6 1674 aa5.96□□□□□ -1.46
CSMD3-203ENST00000343508 CLUAP1Q96AJ1 413 aa5.95□□□□□ -1.46
CSMD3-203ENST00000343508 THOC2Q8NI27 1593 aaKnown RBP5.95□□□□□ -1.46
CSMD3-203ENST00000343508 CCDC146Q8IYE0 955 aa5.95□□□□□ -1.46
CSMD3-203ENST00000343508 STAC3Q96MF2 364 aa5.95□□□□□ -1.46
CSMD3-203ENST00000343508 HTATSF1O43719 755 aaKnown RBP5.95□□□□□ -1.46
CSMD3-203ENST00000343508 PNISRQ8TF01 805 aaKnown RBP5.95□□□□□ -1.46
CSMD3-203ENST00000343508 TDRD9Q8NDG6 1382 aaKnown RBP5.95□□□□□ -1.46
CSMD3-203ENST00000343508 NCAPD3P42695 1498 aa5.95□□□□□ -1.46
CSMD3-203ENST00000343508 RRP9O43818 475 aaKnown RBP5.94□□□□□ -1.46
CSMD3-203ENST00000343508 U2AF1L5P0DN76 240 aaPredicted RBP5.94□□□□□ -1.46
CSMD3-203ENST00000343508 U2AF1Q01081 240 aaKnown RBP eCLIP5.94□□□□□ -1.46
CSMD3-203ENST00000343508 TRAK2O60296 914 aa5.94□□□□□ -1.46
CSMD3-203ENST00000343508 ATP6V1DQ9Y5K8 247 aa5.94□□□□□ -1.46
CSMD3-203ENST00000343508 NAIPQ13075 1403 aa5.94□□□□□ -1.46
CSMD3-203ENST00000343508 NCOA1Q15788 1441 aa5.94□□□□□ -1.46
CSMD3-203ENST00000343508 ZKSCAN2Q63HK3 967 aa5.94□□□□□ -1.46
CSMD3-203ENST00000343508 KIF16BQ96L93 1317 aa5.94□□□□□ -1.46
CSMD3-203ENST00000343508 ERCC6Q03468 1493 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 ITSN2Q9NZM3 1697 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 TPRNQ4KMQ1 711 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 POGKQ9P215 609 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 NESP48681 1621 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 RPRD2Q5VT52 1461 aaKnown RBP5.93□□□□□ -1.46
CSMD3-203ENST00000343508 KIAA1107Q9UPP5 1409 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 PKNOX2Q96KN3 472 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 SRPK2P78362 688 aaKnown RBP5.93□□□□□ -1.46
CSMD3-203ENST00000343508 COG6Q9Y2V7 657 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 NUCB2P80303 420 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 KCNJ4P48050 445 aa5.93□□□□□ -1.46
CSMD3-203ENST00000343508 HNRNPMP52272 730 aaKnown RBP eCLIP5.93□□□□□ -1.46
CSMD3-203ENST00000343508 FRAT2O75474 233 aaPredicted RBP5.92□□□□□ -1.46
CSMD3-203ENST00000343508 CCDC173Q0VFZ6 552 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 PDE3AQ14432 1141 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 KIAA1211Q6ZU35 1233 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 C22orf23Q9BZE7 217 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 ROCK1Q13464 1354 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 BRPF3Q9ULD4 1205 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 DNMBPQ6XZF7 1577 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 HMMRO75330 724 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 ANKRD50Q9ULJ7 1429 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 UBE2Q2Q8WVN8 375 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 SCAPERQ9BY12 1400 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 HDGFL2Q7Z4V5 671 aaPredicted RBP5.92□□□□□ -1.46
CSMD3-203ENST00000343508 DAPK1P53355 1430 aa5.92□□□□□ -1.46
CSMD3-203ENST00000343508 NASPP49321 788 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-203ENST00000343508 REC8O95072 547 aa5.91□□□□□ -1.46
CSMD3-203ENST00000343508 ANKRD45Q5TZF3 282 aa5.91□□□□□ -1.46
CSMD3-203ENST00000343508 RUNDC1Q96C34 613 aa5.91□□□□□ -1.46
CSMD3-203ENST00000343508 OS9Q13438 667 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-203ENST00000343508 DZIP1LQ8IYY4 767 aaKnown RBP5.91□□□□□ -1.46
CSMD3-203ENST00000343508 APAF1O14727 1248 aa5.91□□□□□ -1.46
CSMD3-203ENST00000343508 TPM4P67936 248 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms