RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 TMED8Q6PL24 325 aaPredicted RBP10.83□□□□□ -0.68
TDP1-201ENST00000335725 CARD10Q9BWT7 1032 aa10.83□□□□□ -0.68
TDP1-201ENST00000335725 ZNF500O60304 480 aaPredicted RBP10.82□□□□□ -0.68
TDP1-201ENST00000335725 MRS2Q9HD23 443 aa10.82□□□□□ -0.68
TDP1-201ENST00000335725 UBTFP17480 764 aaKnown RBP10.82□□□□□ -0.68
TDP1-201ENST00000335725 GZF1Q9H116 711 aaPredicted RBP10.82□□□□□ -0.68
TDP1-201ENST00000335725 CEP164Q9UPV0 1460 aa10.81□□□□□ -0.68
TDP1-201ENST00000335725 LMOD3Q0VAK6 560 aa10.81□□□□□ -0.68
TDP1-201ENST00000335725 NGEFQ8N5V2 710 aa10.81□□□□□ -0.68
TDP1-201ENST00000335725 PPP1R9BQ96SB3 815 aa10.81□□□□□ -0.68
TDP1-201ENST00000335725 TRAK2O60296 914 aa10.81□□□□□ -0.68
TDP1-201ENST00000335725 RB1CC1Q8TDY2 1594 aa10.81□□□□□ -0.68
TDP1-201ENST00000335725 MCM4P33991 863 aa10.81□□□□□ -0.68
TDP1-201ENST00000335725 CALCOCO1Q9P1Z2 691 aa10.8□□□□□ -0.68
TDP1-201ENST00000335725 NINLQ9Y2I6 1382 aa10.8□□□□□ -0.68
TDP1-201ENST00000335725 NBPF20Q3BBV1 942 aa10.8□□□□□ -0.68
TDP1-201ENST00000335725 MCM5P33992 734 aa10.8□□□□□ -0.68
TDP1-201ENST00000335725 FAM43BQ6ZT52 329 aaPredicted RBP10.8□□□□□ -0.68
TDP1-201ENST00000335725 P3H3Q8IVL6 736 aa10.8□□□□□ -0.68
TDP1-201ENST00000335725 ZNF592Q92610 1267 aa10.8□□□□□ -0.68
TDP1-201ENST00000335725 DDX11L8A8MPP1 907 aa10.79□□□□□ -0.68
TDP1-201ENST00000335725 BANK1Q8NDB2 785 aa10.79□□□□□ -0.68
TDP1-201ENST00000335725 TRIM6-TRIM34B2RNG4 842 aa10.79□□□□□ -0.68
TDP1-201ENST00000335725 GABPB1Q06547 395 aaPredicted RBP10.79□□□□□ -0.68
TDP1-201ENST00000335725 HSP90AB3PQ58FF7 597 aa10.79□□□□□ -0.68
TDP1-201ENST00000335725 TRIM34Q9BYJ4 488 aa10.79□□□□□ -0.68
TDP1-201ENST00000335725 TNNT3P45378 269 aaPredicted RBP10.79□□□□□ -0.68
TDP1-201ENST00000335725 SETQ01105 290 aaPredicted RBP10.78□□□□□ -0.68
TDP1-201ENST00000335725 RRP1P56182 461 aaKnown RBP10.78□□□□□ -0.68
TDP1-201ENST00000335725 EGFL6Q8IUX8 553 aa10.78□□□□□ -0.68
TDP1-201ENST00000335725 EXOC6Q8TAG9 804 aa10.78□□□□□ -0.68
TDP1-201ENST00000335725 HIRIP3Q9BW71 556 aaPredicted RBP10.77□□□□□ -0.69
TDP1-201ENST00000335725 HMGN5P82970 282 aaKnown RBP10.77□□□□□ -0.69
TDP1-201ENST00000335725 RSF1Q96T23 1441 aaPredicted RBP10.77□□□□□ -0.69
TDP1-201ENST00000335725 CTR9Q6PD62 1173 aa10.76□□□□□ -0.69
TDP1-201ENST00000335725 VPS8Q8N3P4 1428 aa10.76□□□□□ -0.69
TDP1-201ENST00000335725 MYCBPQ99417 103 aaPredicted RBP10.76□□□□□ -0.69
TDP1-201ENST00000335725 KTN1Q86UP2 1357 aaKnown RBP10.76□□□□□ -0.69
TDP1-201ENST00000335725 TULP2O00295 520 aa10.75□□□□□ -0.69
TDP1-201ENST00000335725 SLKQ9H2G2 1235 aaPredicted RBP10.75□□□□□ -0.69
TDP1-201ENST00000335725 NOL7Q9UMY1 257 aaKnown RBP10.75□□□□□ -0.69
TDP1-201ENST00000335725 CLIP1P30622 1438 aa10.75□□□□□ -0.69
TDP1-201ENST00000335725 MAPKBP1O60336 1514 aa10.75□□□□□ -0.69
TDP1-201ENST00000335725 FEZ1Q99689 392 aa10.75□□□□□ -0.69
TDP1-201ENST00000335725 MYRIPQ8NFW9 859 aa10.74□□□□□ -0.69
TDP1-201ENST00000335725 PRIMPOLQ96LW4 560 aa10.74□□□□□ -0.69
TDP1-201ENST00000335725 PSMD1Q99460 953 aa10.74□□□□□ -0.69
TDP1-201ENST00000335725 MFAP1P55081 439 aaKnown RBP10.74□□□□□ -0.69
TDP1-201ENST00000335725 SKOR2Q2VWA4 1001 aaPredicted RBP10.74□□□□□ -0.69
TDP1-201ENST00000335725 ABCC9O60706 1549 aa10.74□□□□□ -0.69
TDP1-201ENST00000335725 GOLGA3Q08378 1498 aa10.73□□□□□ -0.69
TDP1-201ENST00000335725 UPF2Q9HAU5 1272 aaKnown RBP10.73□□□□□ -0.69
TDP1-201ENST00000335725 ANTXR1Q9H6X2 564 aa10.73□□□□□ -0.69
TDP1-201ENST00000335725 SATB1Q01826 763 aa10.72□□□□□ -0.69
TDP1-201ENST00000335725 CEP83Q9Y592 693 aa10.72□□□□□ -0.69
TDP1-201ENST00000335725 NASPP49321 788 aaPredicted RBP10.72□□□□□ -0.69
TDP1-201ENST00000335725 C8orf34Q49A92 452 aa10.72□□□□□ -0.69
TDP1-201ENST00000335725 PRKRIP1Q9H875 184 aaPredicted RBP10.72□□□□□ -0.69
TDP1-201ENST00000335725 LOC102724159A0A0B4J2E5 919 aa10.72□□□□□ -0.69
TDP1-201ENST00000335725 OS9Q13438 667 aaPredicted RBP10.72□□□□□ -0.69
TDP1-201ENST00000335725 PWP2Q15269 919 aaKnown RBP10.72□□□□□ -0.69
TDP1-201ENST00000335725 ATP2B3Q16720 1220 aa10.71□□□□□ -0.69
TDP1-201ENST00000335725 KCNA4P22459 653 aa10.71□□□□□ -0.69
TDP1-201ENST00000335725 GTF2A1P52655 376 aaPredicted RBP10.71□□□□□ -0.69
TDP1-201ENST00000335725 CHMP4CQ96CF2 233 aa10.71□□□□□ -0.69
TDP1-201ENST00000335725 NCAPGQ9BPX3 1015 aa10.71□□□□□ -0.7
TDP1-201ENST00000335725 SMC4Q9NTJ3 1288 aa10.71□□□□□ -0.7
TDP1-201ENST00000335725 RBM25P49756 843 aaKnown RBP10.7□□□□□ -0.7
TDP1-201ENST00000335725 CHMP5Q9NZZ3 219 aa10.7□□□□□ -0.7
TDP1-201ENST00000335725 XPCQ01831 940 aaPredicted RBP10.7□□□□□ -0.7
TDP1-201ENST00000335725 PDCL2Q8N4E4 241 aa10.7□□□□□ -0.7
TDP1-201ENST00000335725 OGFRQ9NZT2 677 aa10.7□□□□□ -0.7
TDP1-201ENST00000335725 CNTLNQ9NXG0 1405 aa10.7□□□□□ -0.7
TDP1-201ENST00000335725 CENPQQ7L2Z9 268 aaPredicted RBP10.7□□□□□ -0.7
TDP1-201ENST00000335725 CREBRFQ8IUR6 639 aa10.7□□□□□ -0.7
TDP1-201ENST00000335725 GTF2F1P35269 517 aaKnown RBP eCLIP10.69□□□□□ -0.7
TDP1-201ENST00000335725 CCDC184Q52MB2 194 aa10.69□□□□□ -0.7
TDP1-201ENST00000335725 CCDC172P0C7W6 258 aa10.69□□□□□ -0.7
TDP1-201ENST00000335725 BRMS1Q9HCU9 246 aa10.69□□□□□ -0.7
TDP1-201ENST00000335725 ZKSCAN5Q9Y2L8 839 aa10.69□□□□□ -0.7
TDP1-201ENST00000335725 RRBP1Q9P2E9 1410 aaKnown RBP10.69□□□□□ -0.7
TDP1-201ENST00000335725 RBM28Q9NW13 759 aaKnown RBP10.68□□□□□ -0.7
TDP1-201ENST00000335725 BRPF1P55201 1214 aaPredicted RBP10.68□□□□□ -0.7
TDP1-201ENST00000335725 RAI14Q9P0K7 980 aa10.68□□□□□ -0.7
TDP1-201ENST00000335725 GOLIM4O00461 696 aa10.68□□□□□ -0.7
TDP1-201ENST00000335725 CAPN2P17655 700 aa10.67□□□□□ -0.7
TDP1-201ENST00000335725 RCAN3Q9UKA8 241 aa10.67□□□□□ -0.7
TDP1-201ENST00000335725 RAB3GAP2Q9H2M9 1393 aa10.67□□□□□ -0.7
TDP1-201ENST00000335725 FHAD1B1AJZ9 1412 aa10.67□□□□□ -0.7
TDP1-201ENST00000335725 NBPF11Q86T75 865 aa10.67□□□□□ -0.7
TDP1-201ENST00000335725 SSR1P43307 286 aaKnown RBP10.66□□□□□ -0.7
TDP1-201ENST00000335725 MAP2K1Q02750 393 aaPredicted RBP10.66□□□□□ -0.7
TDP1-201ENST00000335725 CALRP27797 417 aaKnown RBP10.66□□□□□ -0.7
TDP1-201ENST00000335725 SPDYE4A6NLX3 237 aa10.66□□□□□ -0.7
TDP1-201ENST00000335725 PRR29P0C7W0 189 aa10.66□□□□□ -0.7
TDP1-201ENST00000335725 ZBTB9Q96C00 473 aa10.66□□□□□ -0.7
TDP1-201ENST00000335725 TTC36A6NLP5 189 aa10.65□□□□□ -0.7
TDP1-201ENST00000335725 CCDC39Q9UFE4 941 aa10.65□□□□□ -0.7
TDP1-201ENST00000335725 NPM1P06748 294 aaKnown RBP eCLIP10.65□□□□□ -0.7
TDP1-201ENST00000335725 SLC26A8Q96RN1 970 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms