RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 PREX2Q70Z35 1606 aa11.62□□□□□ -0.55
PDLIM5-201ENST00000317968 POGZQ7Z3K3 1410 aa11.62□□□□□ -0.55
PDLIM5-201ENST00000317968 ZCCHC11Q5TAX3 1644 aaKnown RBP11.62□□□□□ -0.55
PDLIM5-201ENST00000317968 TMF1P82094 1093 aa11.61□□□□□ -0.55
PDLIM5-201ENST00000317968 FOXD1Q16676 465 aa11.61□□□□□ -0.55
PDLIM5-201ENST00000317968 SLC52A1Q9NWF4 448 aa11.61□□□□□ -0.55
PDLIM5-201ENST00000317968 VGFO15240 615 aaPredicted RBP11.61□□□□□ -0.55
PDLIM5-201ENST00000317968 GCC2Q8IWJ2 1684 aa11.6□□□□□ -0.55
PDLIM5-201ENST00000317968 RPGRIP1LQ68CZ1 1315 aa11.6□□□□□ -0.55
PDLIM5-201ENST00000317968 MBD5Q9P267 1494 aa11.6□□□□□ -0.55
PDLIM5-201ENST00000317968 ERICH6Q7L0X2 663 aa11.6□□□□□ -0.55
PDLIM5-201ENST00000317968 NPM2Q86SE8 214 aaKnown RBP11.6□□□□□ -0.55
PDLIM5-201ENST00000317968 ADGBQ8N7X0 1667 aa11.6□□□□□ -0.55
PDLIM5-201ENST00000317968 RPRD2Q5VT52 1461 aaKnown RBP11.59□□□□□ -0.55
PDLIM5-201ENST00000317968 HSPA5P11021 654 aaKnown RBP11.59□□□□□ -0.55
PDLIM5-201ENST00000317968 YTHDC1Q96MU7 727 aaKnown RBP11.58□□□□□ -0.56
PDLIM5-201ENST00000317968 A2MP01023 1474 aa11.58□□□□□ -0.56
PDLIM5-201ENST00000317968 ERCC6L2Q5T890 1561 aa11.58□□□□□ -0.56
PDLIM5-201ENST00000317968 CCER2I3L3R5 266 aa11.57□□□□□ -0.56
PDLIM5-201ENST00000317968 TRAPPC8Q9Y2L5 1435 aa11.57□□□□□ -0.56
PDLIM5-201ENST00000317968 MAST1Q9Y2H9 1570 aa11.57□□□□□ -0.56
PDLIM5-201ENST00000317968 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.56□□□□□ -0.56
PDLIM5-201ENST00000317968 ABCC1P33527 1531 aa11.56□□□□□ -0.56
PDLIM5-201ENST00000317968 MAGI2Q86UL8 1455 aa11.55□□□□□ -0.56
PDLIM5-201ENST00000317968 MYT1Q01538 1121 aa11.55□□□□□ -0.56
PDLIM5-201ENST00000317968 MLECQ14165 292 aa11.55□□□□□ -0.56
PDLIM5-201ENST00000317968 ATP7AQ04656 1500 aa11.54□□□□□ -0.56
PDLIM5-201ENST00000317968 RAPGEF3O95398 923 aa11.53□□□□□ -0.56
PDLIM5-201ENST00000317968 MLH3Q9UHC1 1453 aa11.53□□□□□ -0.56
PDLIM5-201ENST00000317968 SAMD9LQ8IVG5 1584 aa11.53□□□□□ -0.56
PDLIM5-201ENST00000317968 DAXXQ9UER7 740 aaPredicted RBP11.53□□□□□ -0.56
PDLIM5-201ENST00000317968 TTC37Q6PGP7 1564 aa11.53□□□□□ -0.56
PDLIM5-201ENST00000317968 ABCA9Q8IUA7 1624 aa11.53□□□□□ -0.56
PDLIM5-201ENST00000317968 A0A0G2JS52 829 aa11.52□□□□□ -0.56
PDLIM5-201ENST00000317968 CDC42BPAQ5VT25 1732 aa11.52□□□□□ -0.57
PDLIM5-201ENST00000317968 PLXNC1O60486 1568 aa11.51□□□□□ -0.57
PDLIM5-201ENST00000317968 USP47Q96K76 1375 aa11.51□□□□□ -0.57
PDLIM5-201ENST00000317968 ARHGEF12Q9NZN5 1544 aa11.51□□□□□ -0.57
PDLIM5-201ENST00000317968 FAM135AQ9P2D6 1515 aa11.51□□□□□ -0.57
PDLIM5-201ENST00000317968 EID1Q9Y6B2 187 aa11.51□□□□□ -0.57
PDLIM5-201ENST00000317968 KNSTRNQ9Y448 316 aa11.51□□□□□ -0.57
PDLIM5-201ENST00000317968 POGKQ9P215 609 aa11.49□□□□□ -0.57
PDLIM5-201ENST00000317968 KDM5DQ9BY66 1539 aa11.49□□□□□ -0.57
PDLIM5-201ENST00000317968 MIER1Q8N108 512 aa11.49□□□□□ -0.57
PDLIM5-201ENST00000317968 TMC1Q8TDI8 760 aa11.49□□□□□ -0.57
PDLIM5-201ENST00000317968 PZPP20742 1482 aa11.49□□□□□ -0.57
PDLIM5-201ENST00000317968 ZBTB7CA1YPR0 619 aa11.47□□□□□ -0.57
PDLIM5-201ENST00000317968 RALBP1Q15311 655 aa11.47□□□□□ -0.57
PDLIM5-201ENST00000317968 LRRIQ1Q96JM4 1722 aa11.47□□□□□ -0.57
PDLIM5-201ENST00000317968 CANXP27824 592 aaKnown RBP11.47□□□□□ -0.57
PDLIM5-201ENST00000317968 ATP10AO60312 1499 aa11.47□□□□□ -0.57
PDLIM5-201ENST00000317968 KTN1Q86UP2 1357 aaKnown RBP11.46□□□□□ -0.57
PDLIM5-201ENST00000317968 CNTLNQ9NXG0 1405 aa11.46□□□□□ -0.57
PDLIM5-201ENST00000317968 MRS2Q9HD23 443 aa11.46□□□□□ -0.57
PDLIM5-201ENST00000317968 GLI2P10070 1586 aa11.45□□□□□ -0.58
PDLIM5-201ENST00000317968 WASHC2AQ641Q2 1341 aa11.45□□□□□ -0.58
PDLIM5-201ENST00000317968 HIRIP3Q9BW71 556 aaPredicted RBP11.44□□□□□ -0.58
PDLIM5-201ENST00000317968 CFAP53Q96M91 514 aa11.43□□□□□ -0.58
PDLIM5-201ENST00000317968 CROCC2H7BZ55 1655 aa11.43□□□□□ -0.58
PDLIM5-201ENST00000317968 CCDC7Q96M83 1385 aa11.43□□□□□ -0.58
PDLIM5-201ENST00000317968 ST20-MTHFSA0A0A6YYL1 179 aa11.43□□□□□ -0.58
PDLIM5-201ENST00000317968 ZFYVE16Q7Z3T8 1539 aa11.42□□□□□ -0.58
PDLIM5-201ENST00000317968 HECW2Q9P2P5 1572 aa11.41□□□□□ -0.58
PDLIM5-201ENST00000317968 CDC42BPBQ9Y5S2 1711 aa11.41□□□□□ -0.58
PDLIM5-201ENST00000317968 EIF2AK4Q9P2K8 1649 aaKnown RBP11.41□□□□□ -0.58
PDLIM5-201ENST00000317968 WDR43Q15061 677 aaKnown RBP eCLIP11.41□□□□□ -0.58
PDLIM5-201ENST00000317968 UHRF1BP1Q6BDS2 1440 aa11.41□□□□□ -0.58
PDLIM5-201ENST00000317968 EVC2Q86UK5 1308 aa11.4□□□□□ -0.58
PDLIM5-201ENST00000317968 RALGAPBQ86X10 1494 aa11.4□□□□□ -0.58
PDLIM5-201ENST00000317968 CENPJQ9HC77 1338 aaPredicted RBP11.4□□□□□ -0.58
PDLIM5-201ENST00000317968 LMOD2Q6P5Q4 547 aa11.4□□□□□ -0.58
PDLIM5-201ENST00000317968 RIMBP3CA6NJZ7 1639 aa11.4□□□□□ -0.59
PDLIM5-201ENST00000317968 RIMBP3BA6NNM3 1639 aa11.4□□□□□ -0.59
PDLIM5-201ENST00000317968 RIMBP3Q9UFD9 1639 aa11.4□□□□□ -0.59
PDLIM5-201ENST00000317968 NBPF8Q3BBV2 869 aa11.39□□□□□ -0.59
PDLIM5-201ENST00000317968 THEMISQ8N1K5 641 aaPredicted RBP11.39□□□□□ -0.59
PDLIM5-201ENST00000317968 TERF2IPQ9NYB0 399 aa11.39□□□□□ -0.59
PDLIM5-201ENST00000317968 HDGFL2Q7Z4V5 671 aaPredicted RBP11.39□□□□□ -0.59
PDLIM5-201ENST00000317968 UNC13BO14795 1591 aa11.37□□□□□ -0.59
PDLIM5-201ENST00000317968 HNRNPUQ00839 825 aaKnown RBP eCLIP11.37□□□□□ -0.59
PDLIM5-201ENST00000317968 ARHGAP31Q2M1Z3 1444 aa11.36□□□□□ -0.59
PDLIM5-201ENST00000317968 PNNQ9H307 717 aaKnown RBP11.36□□□□□ -0.59
PDLIM5-201ENST00000317968 SRPK2P78362 688 aaKnown RBP11.35□□□□□ -0.59
PDLIM5-201ENST00000317968 KIF7Q2M1P5 1343 aa11.35□□□□□ -0.59
PDLIM5-201ENST00000317968 IQGAP3Q86VI3 1631 aa11.35□□□□□ -0.59
PDLIM5-201ENST00000317968 NLRP13Q86W25 1043 aa11.35□□□□□ -0.59
PDLIM5-201ENST00000317968 NUDCQ9Y266 331 aa11.35□□□□□ -0.59
PDLIM5-201ENST00000317968 PTPRTO14522 1441 aa11.35□□□□□ -0.59
PDLIM5-201ENST00000317968 PRAG1Q86YV5 1406 aa11.34□□□□□ -0.59
PDLIM5-201ENST00000317968 SCAF11Q99590 1463 aaKnown RBP11.34□□□□□ -0.59
PDLIM5-201ENST00000317968 PUS7Q96PZ0 661 aaKnown RBP11.34□□□□□ -0.59
PDLIM5-201ENST00000317968 FAM9BQ8IZU0 186 aa11.33□□□□□ -0.6
PDLIM5-201ENST00000317968 PLEKHG5O94827 1062 aa11.33□□□□□ -0.6
PDLIM5-201ENST00000317968 LMTK2Q8IWU2 1503 aa11.33□□□□□ -0.6
PDLIM5-201ENST00000317968 INO80Q9ULG1 1556 aaPredicted RBP11.33□□□□□ -0.6
PDLIM5-201ENST00000317968 NGEFQ8N5V2 710 aa11.33□□□□□ -0.6
PDLIM5-201ENST00000317968 TET3O43151 1660 aa11.33□□□□□ -0.6
PDLIM5-201ENST00000317968 TRPM2O94759 1503 aa11.32□□□□□ -0.6
PDLIM5-201ENST00000317968 TRAK1Q9UPV9 953 aa11.32□□□□□ -0.6
PDLIM5-201ENST00000317968 TNRQ92752 1358 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms