RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 KIF21AQ7Z4S6 1674 aa6.53□□□□□ -1.36
SCN1A-201ENST00000303395 NBR1Q14596 966 aa6.53□□□□□ -1.36
SCN1A-201ENST00000303395 POLA1P09884 1462 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-201ENST00000303395 MRE11P49959 708 aa6.53□□□□□ -1.36
SCN1A-201ENST00000303395 C11orf95C9JLR9 678 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-201ENST00000303395 GPS2Q13227 327 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 MCM2P49736 904 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 CCDC66A2RUB6 948 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 PLEKHD1A6NEE1 506 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 LETM1O95202 739 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-201ENST00000303395 TUBB4AP04350 444 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 CC2D2AQ9P2K1 1620 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 FGD6Q6ZV73 1430 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 TIAM1Q13009 1591 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 PLEKHG5O94827 1062 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 RRP12Q5JTH9 1297 aaKnown RBP6.52□□□□□ -1.37
SCN1A-201ENST00000303395 RCAN3Q9UKA8 241 aa6.52□□□□□ -1.37
SCN1A-201ENST00000303395 FAM184AQ8NB25 1140 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 TERF1P54274 439 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 PLCB2Q00722 1185 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 HSP90AA2PQ14568 343 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-201ENST00000303395 LRRC9Q6ZRR7 1453 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 ZBTB7CA1YPR0 619 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 GNL2Q13823 731 aaKnown RBP6.51□□□□□ -1.37
SCN1A-201ENST00000303395 CCP110O43303 1012 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 NAP1L5Q96NT1 182 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-201ENST00000303395 ATAD2BQ9ULI0 1458 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 MBD3O95983 291 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 KIF7Q2M1P5 1343 aa6.51□□□□□ -1.37
SCN1A-201ENST00000303395 TPM4P67936 248 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 CHGAP10645 457 aaKnown RBP6.5□□□□□ -1.37
SCN1A-201ENST00000303395 DRC7Q8IY82 874 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 FAM9BQ8IZU0 186 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 FBXO3Q9UK99 471 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 TAOK2Q9UL54 1235 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 HECW1Q76N89 1606 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 CAMSAP2Q08AD1 1489 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 NAP1L2Q9ULW6 460 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-201ENST00000303395 KIF2AO00139 706 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-201ENST00000303395 HMMRO75330 724 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 CAVIN2O95810 425 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 NUCB2P80303 420 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 FTSJ3Q8IY81 847 aaKnown RBP6.5□□□□□ -1.37
SCN1A-201ENST00000303395 HS1BP3Q53T59 392 aa6.5□□□□□ -1.37
SCN1A-201ENST00000303395 E9PSI1 815 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 RNF20Q5VTR2 975 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 KCNJ4P48050 445 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 TPRNQ4KMQ1 711 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 DIAPH3Q9NSV4 1193 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 SUPT6HQ7KZ85 1726 aaKnown RBP6.49□□□□□ -1.37
SCN1A-201ENST00000303395 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.49□□□□□ -1.37
SCN1A-201ENST00000303395 FGD5Q6ZNL6 1462 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 CARD11Q9BXL7 1154 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 CADPSQ9ULU8 1353 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 CECR2Q9BXF3 1484 aa6.49□□□□□ -1.37
SCN1A-201ENST00000303395 HDGFP51858 240 aaKnown RBP6.48□□□□□ -1.37
SCN1A-201ENST00000303395 NOM1Q5C9Z4 860 aaKnown RBP6.48□□□□□ -1.37
SCN1A-201ENST00000303395 SOGA1O94964 1423 aa6.48□□□□□ -1.37
SCN1A-201ENST00000303395 FBLN2P98095 1184 aa6.48□□□□□ -1.37
SCN1A-201ENST00000303395 CFDP1Q9UEE9 299 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-201ENST00000303395 FHOD3Q2V2M9 1422 aa6.48□□□□□ -1.37
SCN1A-201ENST00000303395 CHMP5Q9NZZ3 219 aa6.48□□□□□ -1.37
SCN1A-201ENST00000303395 TUBB4BP68371 445 aa6.48□□□□□ -1.37
SCN1A-201ENST00000303395 ST18O60284 1047 aa6.48□□□□□ -1.37
SCN1A-201ENST00000303395 ACBD3Q9H3P7 528 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 CCDC141Q6ZP82 1450 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 WDR97A6NE52 1622 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 ARHGEF12Q9NZN5 1544 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 WIZO95785 1651 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 TEX14Q8IWB6 1497 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 PRKRIP1Q9H875 184 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-201ENST00000303395 PLEKHH1Q9ULM0 1364 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 BIVM-ERCC5R4GMW8 1640 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 PDE3AQ14432 1141 aa6.47□□□□□ -1.37
SCN1A-201ENST00000303395 CWC15Q9P013 229 aaKnown RBP6.47□□□□□ -1.37
SCN1A-201ENST00000303395 NPM1P06748 294 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCN1A-201ENST00000303395 NUP160Q12769 1436 aa6.46□□□□□ -1.37
SCN1A-201ENST00000303395 REC8O95072 547 aa6.46□□□□□ -1.37
SCN1A-201ENST00000303395 HSP90AB1P08238 724 aaKnown RBP6.46□□□□□ -1.38
SCN1A-201ENST00000303395 PDE4CQ08493 712 aa6.46□□□□□ -1.38
SCN1A-201ENST00000303395 TEX35Q5T0J7 233 aa6.46□□□□□ -1.38
SCN1A-201ENST00000303395 OS9Q13438 667 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-201ENST00000303395 CFTRP13569 1480 aa6.45□□□□□ -1.38
SCN1A-201ENST00000303395 ARGLU1Q9NWB6 273 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-201ENST00000303395 CCDC173Q0VFZ6 552 aa6.45□□□□□ -1.38
SCN1A-201ENST00000303395 SYNJ1O43426 1573 aa6.44□□□□□ -1.38
SCN1A-201ENST00000303395 USP8P40818 1118 aa6.44□□□□□ -1.38
SCN1A-201ENST00000303395 ANKRD30BQ9BXX2 1392 aa6.44□□□□□ -1.38
SCN1A-201ENST00000303395 CCDC39Q9UFE4 941 aa6.44□□□□□ -1.38
SCN1A-201ENST00000303395 LRRFIP1Q32MZ4 808 aaKnown RBP6.44□□□□□ -1.38
SCN1A-201ENST00000303395 FAM107BQ9H098 131 aa6.44□□□□□ -1.38
SCN1A-201ENST00000303395 CENPJQ9HC77 1338 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-201ENST00000303395 RRP1P56182 461 aaKnown RBP6.44□□□□□ -1.38
SCN1A-201ENST00000303395 APPP05067 770 aa6.44□□□□□ -1.38
SCN1A-201ENST00000303395 CWC22Q9HCG8 908 aaKnown RBP6.44□□□□□ -1.38
SCN1A-201ENST00000303395 SEPT11Q9NVA2 429 aaKnown RBP6.44□□□□□ -1.38
SCN1A-201ENST00000303395 SLKQ9H2G2 1235 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-201ENST00000303395 DDX19BQ9UMR2 479 aa6.43□□□□□ -1.38
SCN1A-201ENST00000303395 TPM1P09493 284 aa6.43□□□□□ -1.38
SCN1A-201ENST00000303395 EIF2AK4Q9P2K8 1649 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms