RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 B4GALNT3Q6L9W6 998 aa17.54■□□□□ 0.4
HIF3A-204ENST00000300862 ERCC6L2Q5T890 1561 aa17.54■□□□□ 0.4
HIF3A-204ENST00000300862 ARHGEF12Q9NZN5 1544 aa17.54■□□□□ 0.4
HIF3A-204ENST00000300862 CHD1O14646 1710 aa17.54■□□□□ 0.4
HIF3A-204ENST00000300862 ARID4BQ4LE39 1312 aaPredicted RBP17.53■□□□□ 0.4
HIF3A-204ENST00000300862 NBPF1Q3BBV0 1214 aa17.53■□□□□ 0.4
HIF3A-204ENST00000300862 TMC1Q8TDI8 760 aa17.53■□□□□ 0.4
HIF3A-204ENST00000300862 PPP4R2Q9NY27 417 aa17.53■□□□□ 0.4
HIF3A-204ENST00000300862 PREX2Q70Z35 1606 aa17.53■□□□□ 0.4
HIF3A-204ENST00000300862 TTC37Q6PGP7 1564 aa17.53■□□□□ 0.4
HIF3A-204ENST00000300862 RSPH4AQ5TD94 716 aa17.53■□□□□ 0.4
HIF3A-204ENST00000300862 CCDC144AA2RUR9 1427 aa17.51■□□□□ 0.39
HIF3A-204ENST00000300862 PNISRQ8TF01 805 aaKnown RBP17.5■□□□□ 0.39
HIF3A-204ENST00000300862 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.5■□□□□ 0.39
HIF3A-204ENST00000300862 PLEKHH2Q8IVE3 1493 aa17.49■□□□□ 0.39
HIF3A-204ENST00000300862 PLA2R1Q13018 1463 aa17.48■□□□□ 0.39
HIF3A-204ENST00000300862 ERICH6BQ5W0A0 696 aa17.47■□□□□ 0.39
HIF3A-204ENST00000300862 PRAG1Q86YV5 1406 aa17.46■□□□□ 0.39
HIF3A-204ENST00000300862 FANCIQ9NVI1 1328 aa17.46■□□□□ 0.39
HIF3A-204ENST00000300862 NUDCQ9Y266 331 aa17.45■□□□□ 0.38
HIF3A-204ENST00000300862 SMG6Q86US8 1419 aaKnown RBP17.44■□□□□ 0.38
HIF3A-204ENST00000300862 SALL2Q9Y467 1007 aaPredicted RBP17.43■□□□□ 0.38
HIF3A-204ENST00000300862 ABCC2Q92887 1545 aa17.43■□□□□ 0.38
HIF3A-204ENST00000300862 A2MP01023 1474 aa17.42■□□□□ 0.38
HIF3A-204ENST00000300862 MYBBP1AQ9BQG0 1328 aaKnown RBP17.42■□□□□ 0.38
HIF3A-204ENST00000300862 SHROOM2Q13796 1616 aa17.42■□□□□ 0.38
HIF3A-204ENST00000300862 RALBP1Q15311 655 aa17.4■□□□□ 0.38
HIF3A-204ENST00000300862 EFCAB2Q5VUJ9 269 aa17.39■□□□□ 0.37
HIF3A-204ENST00000300862 TRPM1Q7Z4N2 1603 aa17.39■□□□□ 0.37
HIF3A-204ENST00000300862 UNC13BO14795 1591 aa17.39■□□□□ 0.37
HIF3A-204ENST00000300862 MYO5CQ9NQX4 1742 aa17.39■□□□□ 0.37
HIF3A-204ENST00000300862 MAST1Q9Y2H9 1570 aa17.38■□□□□ 0.37
HIF3A-204ENST00000300862 CC2D1BQ5T0F9 858 aaKnown RBP17.38■□□□□ 0.37
HIF3A-204ENST00000300862 AFAP1Q8N556 730 aa17.37■□□□□ 0.37
HIF3A-204ENST00000300862 DISP3Q9P2K9 1392 aa17.37■□□□□ 0.37
HIF3A-204ENST00000300862 TRAPPC8Q9Y2L5 1435 aa17.37■□□□□ 0.37
HIF3A-204ENST00000300862 TESK2Q96S53 571 aa17.37■□□□□ 0.37
HIF3A-204ENST00000300862 BRD4O60885 1362 aaPredicted RBP17.37■□□□□ 0.37
HIF3A-204ENST00000300862 PLCH2O75038 1416 aa17.36■□□□□ 0.37
HIF3A-204ENST00000300862 LRPPRCP42704 1394 aaKnown RBP17.36■□□□□ 0.37
HIF3A-204ENST00000300862 PER1O15534 1290 aaPredicted RBP17.35■□□□□ 0.37
HIF3A-204ENST00000300862 KTN1Q86UP2 1357 aaKnown RBP17.35■□□□□ 0.37
HIF3A-204ENST00000300862 DUOX2Q9NRD8 1548 aa17.35■□□□□ 0.37
HIF3A-204ENST00000300862 PLXNC1O60486 1568 aa17.34■□□□□ 0.37
HIF3A-204ENST00000300862 PANK3Q9H999 370 aa17.34■□□□□ 0.37
HIF3A-204ENST00000300862 IQGAP3Q86VI3 1631 aa17.34■□□□□ 0.37
HIF3A-204ENST00000300862 GPRASP1Q5JY77 1395 aa17.34■□□□□ 0.37
HIF3A-204ENST00000300862 NLRP13Q86W25 1043 aa17.34■□□□□ 0.37
HIF3A-204ENST00000300862 E9PCH4 1651 aa17.33■□□□□ 0.36
HIF3A-204ENST00000300862 RNF123Q5XPI4 1314 aa17.33■□□□□ 0.36
HIF3A-204ENST00000300862 ZCCHC11Q5TAX3 1644 aaKnown RBP17.32■□□□□ 0.36
HIF3A-204ENST00000300862 PARD3Q8TEW0 1356 aa17.32■□□□□ 0.36
HIF3A-204ENST00000300862 CCDC136Q96JN2 1154 aa17.32■□□□□ 0.36
HIF3A-204ENST00000300862 SPAG9O60271 1321 aaKnown RBP17.31■□□□□ 0.36
HIF3A-204ENST00000300862 ERBINQ96RT1 1412 aa17.31■□□□□ 0.36
HIF3A-204ENST00000300862 COL17A1Q9UMD9 1497 aaPredicted RBP17.3■□□□□ 0.36
HIF3A-204ENST00000300862 TMF1P82094 1093 aa17.29■□□□□ 0.36
HIF3A-204ENST00000300862 MYT1LQ9UL68 1186 aa17.29■□□□□ 0.36
HIF3A-204ENST00000300862 PRDM15P57071 1507 aaPredicted RBP17.28■□□□□ 0.36
HIF3A-204ENST00000300862 ABCC1P33527 1531 aa17.28■□□□□ 0.36
HIF3A-204ENST00000300862 MAGI2Q86UL8 1455 aa17.27■□□□□ 0.36
HIF3A-204ENST00000300862 CDCA7LQ96GN5 454 aa17.27■□□□□ 0.35
HIF3A-204ENST00000300862 ATP10AO60312 1499 aa17.26■□□□□ 0.35
HIF3A-204ENST00000300862 CLASP1Q7Z460 1538 aa17.24■□□□□ 0.35
HIF3A-204ENST00000300862 UHRF1BP1LA0JNW5 1464 aa17.23■□□□□ 0.35
HIF3A-204ENST00000300862 RCAN3Q9UKA8 241 aa17.23■□□□□ 0.35
HIF3A-204ENST00000300862 RRP1P56182 461 aaKnown RBP17.22■□□□□ 0.35
HIF3A-204ENST00000300862 EIF2AK4Q9P2K8 1649 aaKnown RBP17.22■□□□□ 0.35
HIF3A-204ENST00000300862 KIF3BO15066 747 aa17.22■□□□□ 0.35
HIF3A-204ENST00000300862 EXOC6Q8TAG9 804 aa17.21■□□□□ 0.35
HIF3A-204ENST00000300862 LAMC1P11047 1609 aa17.2■□□□□ 0.34
HIF3A-204ENST00000300862 WASHC2CQ9Y4E1 1318 aa17.19■□□□□ 0.34
HIF3A-204ENST00000300862 ZFYVE16Q7Z3T8 1539 aa17.18■□□□□ 0.34
HIF3A-204ENST00000300862 SCAPERQ9BY12 1400 aa17.18■□□□□ 0.34
HIF3A-204ENST00000300862 KNSTRNQ9Y448 316 aa17.17■□□□□ 0.34
HIF3A-204ENST00000300862 PLIN1O60240 522 aa17.17■□□□□ 0.34
HIF3A-204ENST00000300862 ADAMTS8Q9UP79 889 aa17.17■□□□□ 0.34
HIF3A-204ENST00000300862 FANCAO15360 1455 aa17.16■□□□□ 0.34
HIF3A-204ENST00000300862 RTEL1-TNFRSF6BF6WH68 1400 aa17.16■□□□□ 0.34
HIF3A-204ENST00000300862 MADDQ8WXG6 1647 aa17.15■□□□□ 0.34
HIF3A-204ENST00000300862 WDR7Q9Y4E6 1490 aa17.15■□□□□ 0.34
HIF3A-204ENST00000300862 PDE3BQ13370 1112 aa17.15■□□□□ 0.34
HIF3A-204ENST00000300862 RNF17Q9BXT8 1623 aaKnown RBP17.14■□□□□ 0.34
HIF3A-204ENST00000300862 CLTCL1P53675 1640 aa17.14■□□□□ 0.33
HIF3A-204ENST00000300862 TRPM2O94759 1503 aa17.14■□□□□ 0.33
HIF3A-204ENST00000300862 PTPRTO14522 1441 aa17.14■□□□□ 0.33
HIF3A-204ENST00000300862 PPP2R1AP30153 589 aa17.13■□□□□ 0.33
HIF3A-204ENST00000300862 CFAP70Q5T0N1 1121 aa17.13■□□□□ 0.33
HIF3A-204ENST00000300862 AMER1Q5JTC6 1135 aaPredicted RBP17.13■□□□□ 0.33
HIF3A-204ENST00000300862 KANK1Q14678 1352 aa17.13■□□□□ 0.33
HIF3A-204ENST00000300862 DAXXQ9UER7 740 aaPredicted RBP17.12■□□□□ 0.33
HIF3A-204ENST00000300862 BLMP54132 1417 aaPredicted RBP17.11■□□□□ 0.33
HIF3A-204ENST00000300862 ATP7AQ04656 1500 aa17.11■□□□□ 0.33
HIF3A-204ENST00000300862 DEKP35659 375 aaKnown RBP17.11■□□□□ 0.33
HIF3A-204ENST00000300862 UGGT1Q9NYU2 1555 aa17.11■□□□□ 0.33
HIF3A-204ENST00000300862 SCAF11Q99590 1463 aaKnown RBP17.11■□□□□ 0.33
HIF3A-204ENST00000300862 SPHKAPQ2M3C7 1700 aa17.11■□□□□ 0.33
HIF3A-204ENST00000300862 ADGRL1O94910 1474 aa17.1■□□□□ 0.33
HIF3A-204ENST00000300862 ADGRF5Q8IZF2 1346 aa17.1■□□□□ 0.33
HIF3A-204ENST00000300862 WDR43Q15061 677 aaKnown RBP eCLIP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms