RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 MYBBP1AQ9BQG0 1328 aaKnown RBP32.84■■■□□ 2.85
SPTSSA-201ENST00000298130 SHANK2Q9UPX8 1470 aa32.83■■■□□ 2.85
SPTSSA-201ENST00000298130 CC2D1BQ5T0F9 858 aaKnown RBP32.81■■■□□ 2.84
SPTSSA-201ENST00000298130 RNF123Q5XPI4 1314 aa32.79■■■□□ 2.84
SPTSSA-201ENST00000298130 CCDC144AA2RUR9 1427 aa32.77■■■□□ 2.84
SPTSSA-201ENST00000298130 ARHGEF12Q9NZN5 1544 aa32.77■■■□□ 2.84
SPTSSA-201ENST00000298130 FAM135AQ9P2D6 1515 aa32.76■■■□□ 2.84
SPTSSA-201ENST00000298130 RALBP1Q15311 655 aa32.75■■■□□ 2.83
SPTSSA-201ENST00000298130 SAMD9LQ8IVG5 1584 aa32.73■■■□□ 2.83
SPTSSA-201ENST00000298130 CCDC141Q6ZP82 1450 aa32.73■■■□□ 2.83
SPTSSA-201ENST00000298130 BCL11AQ9H165 835 aa32.73■■■□□ 2.83
SPTSSA-201ENST00000298130 LRPPRCP42704 1394 aaKnown RBP32.72■■■□□ 2.83
SPTSSA-201ENST00000298130 BRD4O60885 1362 aaPredicted RBP32.72■■■□□ 2.83
SPTSSA-201ENST00000298130 PAK3O75914 559 aaPredicted RBP32.72■■■□□ 2.83
SPTSSA-201ENST00000298130 CDCA7LQ96GN5 454 aa32.72■■■□□ 2.83
SPTSSA-201ENST00000298130 KDM5DQ9BY66 1539 aa32.71■■■□□ 2.83
SPTSSA-201ENST00000298130 EXOC6Q8TAG9 804 aa32.71■■■□□ 2.83
SPTSSA-201ENST00000298130 PRAG1Q86YV5 1406 aa32.69■■■□□ 2.82
SPTSSA-201ENST00000298130 SYCP2Q9BX26 1530 aa32.68■■■□□ 2.82
SPTSSA-201ENST00000298130 PLA2R1Q13018 1463 aa32.67■■■□□ 2.82
SPTSSA-201ENST00000298130 KTN1Q86UP2 1357 aaKnown RBP32.66■■■□□ 2.82
SPTSSA-201ENST00000298130 NLRP13Q86W25 1043 aa32.66■■■□□ 2.82
SPTSSA-201ENST00000298130 DISP3Q9P2K9 1392 aa32.66■■■□□ 2.82
SPTSSA-201ENST00000298130 PER1O15534 1290 aaPredicted RBP32.66■■■□□ 2.82
SPTSSA-201ENST00000298130 RRP1P56182 461 aaKnown RBP32.65■■■□□ 2.82
SPTSSA-201ENST00000298130 PANK3Q9H999 370 aa32.65■■■□□ 2.82
SPTSSA-201ENST00000298130 CDC42BPBQ9Y5S2 1711 aa32.65■■■□□ 2.82
SPTSSA-201ENST00000298130 NBR1Q14596 966 aa32.64■■■□□ 2.82
SPTSSA-201ENST00000298130 RCAN3Q9UKA8 241 aa32.64■■■□□ 2.81
SPTSSA-201ENST00000298130 PLEKHH2Q8IVE3 1493 aa32.63■■■□□ 2.81
SPTSSA-201ENST00000298130 ARHGAP5Q13017 1502 aa32.63■■■□□ 2.81
SPTSSA-201ENST00000298130 ARHGEF5Q12774 1597 aa32.63■■■□□ 2.81
SPTSSA-201ENST00000298130 PLIN1O60240 522 aa32.61■■■□□ 2.81
SPTSSA-201ENST00000298130 TESK2Q96S53 571 aa32.61■■■□□ 2.81
SPTSSA-201ENST00000298130 NOP58Q9Y2X3 529 aaKnown RBP32.6■■■□□ 2.81
SPTSSA-201ENST00000298130 A2MP01023 1474 aa32.6■■■□□ 2.81
SPTSSA-201ENST00000298130 PARD3Q8TEW0 1356 aa32.58■■■□□ 2.81
SPTSSA-201ENST00000298130 RSPH4AQ5TD94 716 aa32.57■■■□□ 2.8
SPTSSA-201ENST00000298130 TTC37Q6PGP7 1564 aa32.56■■■□□ 2.8
SPTSSA-201ENST00000298130 NPM2Q86SE8 214 aaKnown RBP32.54■■■□□ 2.8
SPTSSA-201ENST00000298130 PREX2Q70Z35 1606 aa32.54■■■□□ 2.8
SPTSSA-201ENST00000298130 TRPM1Q7Z4N2 1603 aa32.54■■■□□ 2.8
SPTSSA-201ENST00000298130 SKAP1Q86WV1 359 aa32.53■■■□□ 2.8
SPTSSA-201ENST00000298130 E9PCH4 1651 aa32.51■■■□□ 2.79
SPTSSA-201ENST00000298130 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.49■■■□□ 2.79
SPTSSA-201ENST00000298130 ANP32AP39687 249 aaKnown RBP32.48■■■□□ 2.79
SPTSSA-201ENST00000298130 ERCC6L2Q5T890 1561 aa32.47■■■□□ 2.79
SPTSSA-201ENST00000298130 TMF1P82094 1093 aa32.47■■■□□ 2.79
SPTSSA-201ENST00000298130 ERBINQ96RT1 1412 aa32.46■■■□□ 2.79
SPTSSA-201ENST00000298130 COL17A1Q9UMD9 1497 aaPredicted RBP32.44■■■□□ 2.78
SPTSSA-201ENST00000298130 GPRASP1Q5JY77 1395 aa32.43■■■□□ 2.78
SPTSSA-201ENST00000298130 IPO9Q96P70 1041 aaKnown RBP32.41■■■□□ 2.78
SPTSSA-201ENST00000298130 ADAMTS8Q9UP79 889 aa32.4■■■□□ 2.78
SPTSSA-201ENST00000298130 AFAP1Q8N556 730 aa32.39■■■□□ 2.78
SPTSSA-201ENST00000298130 DEKP35659 375 aaKnown RBP32.36■■■□□ 2.77
SPTSSA-201ENST00000298130 PDE3BQ13370 1112 aa32.36■■■□□ 2.77
SPTSSA-201ENST00000298130 CRBNQ96SW2 442 aa32.36■■■□□ 2.77
SPTSSA-201ENST00000298130 ZBTB47Q9UFB7 747 aaPredicted RBP32.36■■■□□ 2.77
SPTSSA-201ENST00000298130 UNC13BO14795 1591 aa32.35■■■□□ 2.77
SPTSSA-201ENST00000298130 C20orf194Q5TEA3 1177 aa32.35■■■□□ 2.77
SPTSSA-201ENST00000298130 PRDM15P57071 1507 aaPredicted RBP32.34■■■□□ 2.77
SPTSSA-201ENST00000298130 TRAPPC8Q9Y2L5 1435 aa32.32■■■□□ 2.77
SPTSSA-201ENST00000298130 CHD1O14646 1710 aa32.32■■■□□ 2.76
SPTSSA-201ENST00000298130 EFCAB2Q5VUJ9 269 aa32.31■■■□□ 2.76
SPTSSA-201ENST00000298130 KNSTRNQ9Y448 316 aa32.3■■■□□ 2.76
SPTSSA-201ENST00000298130 MYO5CQ9NQX4 1742 aa32.3■■■□□ 2.76
SPTSSA-201ENST00000298130 MYT1LQ9UL68 1186 aa32.3■■■□□ 2.76
SPTSSA-201ENST00000298130 PDE4AP27815 886 aa32.29■■■□□ 2.76
SPTSSA-201ENST00000298130 IQGAP3Q86VI3 1631 aa32.27■■■□□ 2.76
SPTSSA-201ENST00000298130 MAGI2Q86UL8 1455 aa32.27■■■□□ 2.76
SPTSSA-201ENST00000298130 PPP2R1AP30153 589 aa32.26■■■□□ 2.75
SPTSSA-201ENST00000298130 MAST1Q9Y2H9 1570 aa32.25■■■□□ 2.75
SPTSSA-201ENST00000298130 DUOX2Q9NRD8 1548 aa32.25■■■□□ 2.75
SPTSSA-201ENST00000298130 WASHC2CQ9Y4E1 1318 aa32.25■■■□□ 2.75
SPTSSA-201ENST00000298130 SPAG9O60271 1321 aaKnown RBP32.23■■■□□ 2.75
SPTSSA-201ENST00000298130 CCDC146Q8IYE0 955 aa32.23■■■□□ 2.75
SPTSSA-201ENST00000298130 BLMP54132 1417 aaPredicted RBP32.23■■■□□ 2.75
SPTSSA-201ENST00000298130 ABCC2Q92887 1545 aa32.23■■■□□ 2.75
SPTSSA-201ENST00000298130 TCERG1O14776 1098 aaKnown RBP32.22■■■□□ 2.75
SPTSSA-201ENST00000298130 WDR43Q15061 677 aaKnown RBP eCLIP32.22■■■□□ 2.75
SPTSSA-201ENST00000298130 PLCH2O75038 1416 aa32.21■■■□□ 2.75
SPTSSA-201ENST00000298130 PLEKHH1Q9ULM0 1364 aa32.2■■■□□ 2.74
SPTSSA-201ENST00000298130 PLXNC1O60486 1568 aa32.19■■■□□ 2.74
SPTSSA-201ENST00000298130 AMER1Q5JTC6 1135 aaPredicted RBP32.19■■■□□ 2.74
SPTSSA-201ENST00000298130 WDR7Q9Y4E6 1490 aa32.18■■■□□ 2.74
SPTSSA-201ENST00000298130 LAS1LQ9Y4W2 734 aaKnown RBP32.17■■■□□ 2.74
SPTSSA-201ENST00000298130 BACH2Q9BYV9 841 aa32.17■■■□□ 2.74
SPTSSA-201ENST00000298130 EIF2AK4Q9P2K8 1649 aaKnown RBP32.14■■■□□ 2.74
SPTSSA-201ENST00000298130 ATP10AO60312 1499 aa32.13■■■□□ 2.73
SPTSSA-201ENST00000298130 KIF3BO15066 747 aa32.12■■■□□ 2.73
SPTSSA-201ENST00000298130 CFAP70Q5T0N1 1121 aa32.11■■■□□ 2.73
SPTSSA-201ENST00000298130 LAMC1P11047 1609 aa32.1■■■□□ 2.73
SPTSSA-201ENST00000298130 DUSP27Q5VZP5 1158 aa32.1■■■□□ 2.73
SPTSSA-201ENST00000298130 SHROOM2Q13796 1616 aa32.07■■■□□ 2.72
SPTSSA-201ENST00000298130 ZMYM4Q5VZL5 1548 aa32.07■■■□□ 2.72
SPTSSA-201ENST00000298130 SPINK5Q9NQ38 1064 aaPredicted RBP32.07■■■□□ 2.72
SPTSSA-201ENST00000298130 RTL5Q5HYW3 569 aaPredicted RBP32.06■■■□□ 2.72
SPTSSA-201ENST00000298130 ABCC1P33527 1531 aa32.05■■■□□ 2.72
SPTSSA-201ENST00000298130 ZCCHC11Q5TAX3 1644 aaKnown RBP32.04■■■□□ 2.72
SPTSSA-201ENST00000298130 GOLGA2Q08379 1002 aa32.04■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms