RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 FAM9BQ8IZU0 186 aa14.04□□□□□ -0.16
SKA1-201ENST00000285116 CDC42BPBQ9Y5S2 1711 aa14.04□□□□□ -0.16
SKA1-201ENST00000285116 INSRP06213 1382 aa14.03□□□□□ -0.16
SKA1-201ENST00000285116 KIF15Q9NS87 1388 aa14.03□□□□□ -0.16
SKA1-201ENST00000285116 PKD2Q13563 968 aa14.03□□□□□ -0.16
SKA1-201ENST00000285116 NUDCQ9Y266 331 aa14.03□□□□□ -0.16
SKA1-201ENST00000285116 BRD4O60885 1362 aaPredicted RBP14.03□□□□□ -0.16
SKA1-201ENST00000285116 B4GALNT3Q6L9W6 998 aa14.02□□□□□ -0.16
SKA1-201ENST00000285116 SAMD9LQ8IVG5 1584 aa14.02□□□□□ -0.17
SKA1-201ENST00000285116 PLXNC1O60486 1568 aa14.02□□□□□ -0.17
SKA1-201ENST00000285116 CCDC141Q6ZP82 1450 aa14.01□□□□□ -0.17
SKA1-201ENST00000285116 FAM135AQ9P2D6 1515 aa14.01□□□□□ -0.17
SKA1-201ENST00000285116 PNISRQ8TF01 805 aaKnown RBP14□□□□□ -0.17
SKA1-201ENST00000285116 IQGAP3Q86VI3 1631 aa14□□□□□ -0.17
SKA1-201ENST00000285116 EIF2AK4Q9P2K8 1649 aaKnown RBP13.99□□□□□ -0.17
SKA1-201ENST00000285116 NUP155O75694 1391 aa13.99□□□□□ -0.17
SKA1-201ENST00000285116 GPRASP1Q5JY77 1395 aa13.99□□□□□ -0.17
SKA1-201ENST00000285116 NBR1Q14596 966 aa13.98□□□□□ -0.17
SKA1-201ENST00000285116 RALBP1Q15311 655 aa13.97□□□□□ -0.17
SKA1-201ENST00000285116 RSPH4AQ5TD94 716 aa13.97□□□□□ -0.17
SKA1-201ENST00000285116 PRDM15P57071 1507 aaPredicted RBP13.97□□□□□ -0.17
SKA1-201ENST00000285116 PLEKHD1A6NEE1 506 aa13.97□□□□□ -0.17
SKA1-201ENST00000285116 OSCARQ8IYS5 282 aa13.97□□□□□ -0.17
SKA1-201ENST00000285116 ATP10AO60312 1499 aa13.97□□□□□ -0.17
SKA1-201ENST00000285116 ERCC6L2Q5T890 1561 aa13.97□□□□□ -0.17
SKA1-201ENST00000285116 PAK3O75914 559 aaPredicted RBP13.97□□□□□ -0.17
SKA1-201ENST00000285116 MAGI2Q86UL8 1455 aa13.96□□□□□ -0.17
SKA1-201ENST00000285116 MYO5CQ9NQX4 1742 aa13.96□□□□□ -0.17
SKA1-201ENST00000285116 PRAG1Q86YV5 1406 aa13.96□□□□□ -0.17
SKA1-201ENST00000285116 MYBBP1AQ9BQG0 1328 aaKnown RBP13.96□□□□□ -0.18
SKA1-201ENST00000285116 SHROOM2Q13796 1616 aa13.95□□□□□ -0.18
SKA1-201ENST00000285116 RNF17Q9BXT8 1623 aaKnown RBP13.95□□□□□ -0.18
SKA1-201ENST00000285116 PARD3Q8TEW0 1356 aa13.94□□□□□ -0.18
SKA1-201ENST00000285116 ANP32AP39687 249 aaKnown RBP13.94□□□□□ -0.18
SKA1-201ENST00000285116 RTL5Q5HYW3 569 aaPredicted RBP13.94□□□□□ -0.18
SKA1-201ENST00000285116 IPO9Q96P70 1041 aaKnown RBP13.94□□□□□ -0.18
SKA1-201ENST00000285116 WASHC2CQ9Y4E1 1318 aa13.93□□□□□ -0.18
SKA1-201ENST00000285116 PLEKHH2Q8IVE3 1493 aa13.93□□□□□ -0.18
SKA1-201ENST00000285116 COL17A1Q9UMD9 1497 aaPredicted RBP13.93□□□□□ -0.18
SKA1-201ENST00000285116 CARD11Q9BXL7 1154 aa13.92□□□□□ -0.18
SKA1-201ENST00000285116 TSPY4P0CV99 314 aa13.92□□□□□ -0.18
SKA1-201ENST00000285116 TSPY10P0CW01 314 aa13.92□□□□□ -0.18
SKA1-201ENST00000285116 SENP3Q9H4L4 574 aaPredicted RBP13.92□□□□□ -0.18
SKA1-201ENST00000285116 PDE3BQ13370 1112 aa13.9□□□□□ -0.18
SKA1-201ENST00000285116 ZBTB47Q9UFB7 747 aaPredicted RBP13.9□□□□□ -0.18
SKA1-201ENST00000285116 PLA2R1Q13018 1463 aa13.89□□□□□ -0.19
SKA1-201ENST00000285116 TTC37Q6PGP7 1564 aa13.89□□□□□ -0.19
SKA1-201ENST00000285116 TMC1Q8TDI8 760 aa13.89□□□□□ -0.19
SKA1-201ENST00000285116 DUOX2Q9NRD8 1548 aa13.89□□□□□ -0.19
SKA1-201ENST00000285116 A2MP01023 1474 aa13.88□□□□□ -0.19
SKA1-201ENST00000285116 CCDC144AA2RUR9 1427 aa13.88□□□□□ -0.19
SKA1-201ENST00000285116 SYCP2Q9BX26 1530 aa13.88□□□□□ -0.19
SKA1-201ENST00000285116 BLMP54132 1417 aaPredicted RBP13.88□□□□□ -0.19
SKA1-201ENST00000285116 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.87□□□□□ -0.19
SKA1-201ENST00000285116 ST20-MTHFSA0A0A6YYL1 179 aa13.87□□□□□ -0.19
SKA1-201ENST00000285116 ANO8Q9HCE9 1232 aaPredicted RBP13.87□□□□□ -0.19
SKA1-201ENST00000285116 ERBINQ96RT1 1412 aa13.87□□□□□ -0.19
SKA1-201ENST00000285116 KCNA4P22459 653 aa13.86□□□□□ -0.19
SKA1-201ENST00000285116 NLRP13Q86W25 1043 aa13.86□□□□□ -0.19
SKA1-201ENST00000285116 CCDC136Q96JN2 1154 aa13.86□□□□□ -0.19
SKA1-201ENST00000285116 IQGAP1P46940 1657 aa13.86□□□□□ -0.19
SKA1-201ENST00000285116 ZNF326Q5BKZ1 582 aaKnown RBP13.84□□□□□ -0.19
SKA1-201ENST00000285116 NEURL4Q96JN8 1562 aa13.84□□□□□ -0.19
SKA1-201ENST00000285116 CHD1O14646 1710 aa13.84□□□□□ -0.19
SKA1-201ENST00000285116 PER1O15534 1290 aaPredicted RBP13.84□□□□□ -0.19
SKA1-201ENST00000285116 ABCC2Q92887 1545 aa13.83□□□□□ -0.19
SKA1-201ENST00000285116 DCAF11Q8TEB1 546 aa13.83□□□□□ -0.2
SKA1-201ENST00000285116 ARHGAP5Q13017 1502 aa13.83□□□□□ -0.2
SKA1-201ENST00000285116 HNRNPMP52272 730 aaKnown RBP eCLIP13.83□□□□□ -0.24e-10■■■□□ 18.6
SKA1-201ENST00000285116 CEP152O94986 1710 aa13.82□□□□□ -0.2
SKA1-201ENST00000285116 SPHKAPQ2M3C7 1700 aa13.82□□□□□ -0.2
SKA1-201ENST00000285116 RRP1P56182 461 aaKnown RBP13.82□□□□□ -0.2
SKA1-201ENST00000285116 MADDQ8WXG6 1647 aa13.81□□□□□ -0.2
SKA1-201ENST00000285116 ARAP3Q8WWN8 1544 aa13.81□□□□□ -0.2
SKA1-201ENST00000285116 KIAA1210Q9ULL0 1709 aa13.81□□□□□ -0.2
SKA1-201ENST00000285116 CLASP1Q7Z460 1538 aa13.81□□□□□ -0.2
SKA1-201ENST00000285116 DEPDC5O75140 1603 aa13.8□□□□□ -0.2
SKA1-201ENST00000285116 SYNMO15061 1565 aa13.79□□□□□ -0.2
SKA1-201ENST00000285116 TESK2Q96S53 571 aa13.79□□□□□ -0.2
SKA1-201ENST00000285116 USP35Q9P2H5 1018 aa13.79□□□□□ -0.2
SKA1-201ENST00000285116 SALL2Q9Y467 1007 aaPredicted RBP13.79□□□□□ -0.2
SKA1-201ENST00000285116 ABCC1P33527 1531 aa13.79□□□□□ -0.2
SKA1-201ENST00000285116 TRPM2O94759 1503 aa13.78□□□□□ -0.2
SKA1-201ENST00000285116 UHRF1BP1LA0JNW5 1464 aa13.78□□□□□ -0.2
SKA1-201ENST00000285116 TCERG1O14776 1098 aaKnown RBP13.77□□□□□ -0.21
SKA1-201ENST00000285116 MS4A1P11836 297 aa13.77□□□□□ -0.21
SKA1-201ENST00000285116 RCAN3Q9UKA8 241 aa13.77□□□□□ -0.21
SKA1-201ENST00000285116 IL27Q8NEV9 243 aa13.77□□□□□ -0.21
SKA1-201ENST00000285116 STAC3Q96MF2 364 aa13.77□□□□□ -0.21
SKA1-201ENST00000285116 POLR3GLQ9BT43 218 aa13.77□□□□□ -0.21
SKA1-201ENST00000285116 SCAPERQ9BY12 1400 aa13.76□□□□□ -0.21
SKA1-201ENST00000285116 DISP3Q9P2K9 1392 aa13.76□□□□□ -0.21
SKA1-201ENST00000285116 KDM2AQ9Y2K7 1162 aa13.76□□□□□ -0.21
SKA1-201ENST00000285116 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.75□□□□□ -0.212e-6■■■■□ 20.8
SKA1-201ENST00000285116 PLCH2O75038 1416 aa13.75□□□□□ -0.21
SKA1-201ENST00000285116 WDR7Q9Y4E6 1490 aa13.74□□□□□ -0.21
SKA1-201ENST00000285116 RTEL1-TNFRSF6BF6WH68 1400 aa13.74□□□□□ -0.21
SKA1-201ENST00000285116 TET3O43151 1660 aa13.74□□□□□ -0.21
SKA1-201ENST00000285116 MYOM1P52179 1685 aa13.74□□□□□ -0.21
SKA1-201ENST00000285116 ZCCHC11Q5TAX3 1644 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms