RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ABCC10Q5T3U5 1492 aa15.61■□□□□ 0.09
VPS4A-201ENST00000254950 C14orf37Q86TY3 774 aa15.61■□□□□ 0.09
VPS4A-201ENST00000254950 DNMT1P26358 1616 aaKnown RBP15.6■□□□□ 0.09
VPS4A-201ENST00000254950 EID1Q9Y6B2 187 aa15.6■□□□□ 0.09
VPS4A-201ENST00000254950 GTF3C3Q9Y5Q9 886 aa15.59■□□□□ 0.09
VPS4A-201ENST00000254950 ZNF518AQ6AHZ1 1483 aa15.59■□□□□ 0.09
VPS4A-201ENST00000254950 SRPK2P78362 688 aaKnown RBP15.59■□□□□ 0.09
VPS4A-201ENST00000254950 TEX14Q8IWB6 1497 aa15.58■□□□□ 0.08
VPS4A-201ENST00000254950 CLASP1Q7Z460 1538 aa15.58■□□□□ 0.08
VPS4A-201ENST00000254950 DUOX2Q9NRD8 1548 aa15.58■□□□□ 0.08
VPS4A-201ENST00000254950 TRAK1Q9UPV9 953 aa15.57■□□□□ 0.08
VPS4A-201ENST00000254950 CCER2I3L3R5 266 aa15.56■□□□□ 0.08
VPS4A-201ENST00000254950 NBPF8Q3BBV2 869 aa15.56■□□□□ 0.08
VPS4A-201ENST00000254950 SLC52A1Q9NWF4 448 aa15.56■□□□□ 0.08
VPS4A-201ENST00000254950 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.56■□□□□ 0.08
VPS4A-201ENST00000254950 ERBINQ96RT1 1412 aa15.55■□□□□ 0.08
VPS4A-201ENST00000254950 RTEL1-TNFRSF6BF6WH68 1400 aa15.55■□□□□ 0.08
VPS4A-201ENST00000254950 CC2D1BQ5T0F9 858 aaKnown RBP15.55■□□□□ 0.08
VPS4A-201ENST00000254950 ADGRL2O95490 1459 aa15.55■□□□□ 0.08
VPS4A-201ENST00000254950 SALL2Q9Y467 1007 aaPredicted RBP15.53■□□□□ 0.08
VPS4A-201ENST00000254950 A2MP01023 1474 aa15.52■□□□□ 0.08
VPS4A-201ENST00000254950 MAPKBP1O60336 1514 aa15.52■□□□□ 0.07
VPS4A-201ENST00000254950 CFAP53Q96M91 514 aa15.52■□□□□ 0.07
VPS4A-201ENST00000254950 RPRD2Q5VT52 1461 aaKnown RBP15.52■□□□□ 0.07
VPS4A-201ENST00000254950 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.51■□□□□ 0.07
VPS4A-201ENST00000254950 POGZQ7Z3K3 1410 aa15.51■□□□□ 0.07
VPS4A-201ENST00000254950 SCAF1Q9H7N4 1312 aaKnown RBP15.51■□□□□ 0.07
VPS4A-201ENST00000254950 ZCCHC11Q5TAX3 1644 aaKnown RBP15.51■□□□□ 0.07
VPS4A-201ENST00000254950 KTN1Q86UP2 1357 aaKnown RBP15.49■□□□□ 0.07
VPS4A-201ENST00000254950 MBD5Q9P267 1494 aa15.49■□□□□ 0.07
VPS4A-201ENST00000254950 CFAP70Q5T0N1 1121 aa15.48■□□□□ 0.07
VPS4A-201ENST00000254950 MYO5CQ9NQX4 1742 aa15.48■□□□□ 0.07
VPS4A-201ENST00000254950 ARHGEF5Q12774 1597 aa15.47■□□□□ 0.07
VPS4A-201ENST00000254950 PPP6R1Q9UPN7 881 aa15.47■□□□□ 0.07
VPS4A-201ENST00000254950 NBPF1Q3BBV0 1214 aa15.47■□□□□ 0.07
VPS4A-201ENST00000254950 CCDC7Q96M83 1385 aa15.47■□□□□ 0.07
VPS4A-201ENST00000254950 RALBP1Q15311 655 aa15.47■□□□□ 0.07
VPS4A-201ENST00000254950 HDGFL2Q7Z4V5 671 aaPredicted RBP15.46■□□□□ 0.07
VPS4A-201ENST00000254950 RPGRIP1LQ68CZ1 1315 aa15.46■□□□□ 0.07
VPS4A-201ENST00000254950 SHROOM2Q13796 1616 aa15.46■□□□□ 0.07
VPS4A-201ENST00000254950 TTC37Q6PGP7 1564 aa15.46■□□□□ 0.07
VPS4A-201ENST00000254950 NEO1Q92859 1461 aa15.46■□□□□ 0.06
VPS4A-201ENST00000254950 KIF7Q2M1P5 1343 aa15.45■□□□□ 0.06
VPS4A-201ENST00000254950 CENPJQ9HC77 1338 aaPredicted RBP15.45■□□□□ 0.06
VPS4A-201ENST00000254950 FAM135AQ9P2D6 1515 aa15.44■□□□□ 0.06
VPS4A-201ENST00000254950 TNNT2P45379 298 aaPredicted RBP15.44■□□□□ 0.06
VPS4A-201ENST00000254950 MORC1Q86VD1 984 aa15.44■□□□□ 0.06
VPS4A-201ENST00000254950 ATP7AQ04656 1500 aa15.43■□□□□ 0.06
VPS4A-201ENST00000254950 EVC2Q86UK5 1308 aa15.43■□□□□ 0.06
VPS4A-201ENST00000254950 PREX2Q70Z35 1606 aa15.43■□□□□ 0.06
VPS4A-201ENST00000254950 SAMD9LQ8IVG5 1584 aa15.43■□□□□ 0.06
VPS4A-201ENST00000254950 ADCY10Q96PN6 1610 aa15.42■□□□□ 0.06
VPS4A-201ENST00000254950 TMEM132EQ6IEE7 984 aa15.42■□□□□ 0.06
VPS4A-201ENST00000254950 WASHC2AQ641Q2 1341 aa15.42■□□□□ 0.06
VPS4A-201ENST00000254950 TERF2IPQ9NYB0 399 aa15.42■□□□□ 0.06
VPS4A-201ENST00000254950 PZPP20742 1482 aa15.42■□□□□ 0.06
VPS4A-201ENST00000254950 PANK3Q9H999 370 aa15.42■□□□□ 0.06
VPS4A-201ENST00000254950 PPM1GO15355 546 aaPredicted RBP15.41■□□□□ 0.06
VPS4A-201ENST00000254950 CANXP27824 592 aaKnown RBP15.41■□□□□ 0.06
VPS4A-201ENST00000254950 NUDCQ9Y266 331 aa15.4■□□□□ 0.06
VPS4A-201ENST00000254950 GCC2Q8IWJ2 1684 aa15.39■□□□□ 0.05
VPS4A-201ENST00000254950 MINK1Q8N4C8 1332 aaPredicted RBP15.39■□□□□ 0.05
VPS4A-201ENST00000254950 IDI1Q13907 227 aa15.39■□□□□ 0.05
VPS4A-201ENST00000254950 PRKRIP1Q9H875 184 aaPredicted RBP15.39■□□□□ 0.05
VPS4A-201ENST00000254950 ADGBQ8N7X0 1667 aa15.38■□□□□ 0.05
VPS4A-201ENST00000254950 ABCC1P33527 1531 aa15.38■□□□□ 0.05
VPS4A-201ENST00000254950 FBXO31Q5XUX0 539 aaPredicted RBP15.38■□□□□ 0.05
VPS4A-201ENST00000254950 NLRP13Q86W25 1043 aa15.37■□□□□ 0.05
VPS4A-201ENST00000254950 TXNDC2Q86VQ3 553 aa15.37■□□□□ 0.05
VPS4A-201ENST00000254950 CFAP74Q9C0B2 1584 aa15.37■□□□□ 0.05
VPS4A-201ENST00000254950 FKBP8Q14318 412 aa15.36■□□□□ 0.05
VPS4A-201ENST00000254950 THEMISQ8N1K5 641 aaPredicted RBP15.36■□□□□ 0.05
VPS4A-201ENST00000254950 CDC42BPAQ5VT25 1732 aa15.36■□□□□ 0.05
VPS4A-201ENST00000254950 CNTLNQ9NXG0 1405 aa15.35■□□□□ 0.05
VPS4A-201ENST00000254950 PLEKHG5O94827 1062 aa15.35■□□□□ 0.05
VPS4A-201ENST00000254950 ARAP3Q8WWN8 1544 aa15.35■□□□□ 0.05
VPS4A-201ENST00000254950 SENP3-EIF4A1A0A087X0R7 540 aa15.35■□□□□ 0.05
VPS4A-201ENST00000254950 LRRIQ1Q96JM4 1722 aa15.34■□□□□ 0.05
VPS4A-201ENST00000254950 ZBTB7CA1YPR0 619 aa15.33■□□□□ 0.05
VPS4A-201ENST00000254950 LMOD2Q6P5Q4 547 aa15.33■□□□□ 0.05
VPS4A-201ENST00000254950 MYBBP1AQ9BQG0 1328 aaKnown RBP15.32■□□□□ 0.04
VPS4A-201ENST00000254950 U2SURPO15042 1029 aaKnown RBP15.32■□□□□ 0.04
VPS4A-201ENST00000254950 ATP10AO60312 1499 aa15.31■□□□□ 0.04
VPS4A-201ENST00000254950 ADGRF5Q8IZF2 1346 aa15.31■□□□□ 0.04
VPS4A-201ENST00000254950 ARHGEF12Q9NZN5 1544 aa15.31■□□□□ 0.04
VPS4A-201ENST00000254950 MAPK8IP3Q9UPT6 1336 aa15.31■□□□□ 0.04
VPS4A-201ENST00000254950 NUTM2FA1L443 756 aa15.3■□□□□ 0.04
VPS4A-201ENST00000254950 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.29■□□□□ 0.04
VPS4A-201ENST00000254950 NGDNQ8NEJ9 315 aaKnown RBP15.29■□□□□ 0.04
VPS4A-201ENST00000254950 CGNL1Q0VF96 1302 aa15.29■□□□□ 0.04
VPS4A-201ENST00000254950 MLH3Q9UHC1 1453 aa15.29■□□□□ 0.04
VPS4A-201ENST00000254950 NOS1P29475 1434 aa15.28■□□□□ 0.04
VPS4A-201ENST00000254950 CEBPAP49715 358 aaPredicted RBP15.28■□□□□ 0.04
VPS4A-201ENST00000254950 PRAM1Q96QH2 718 aa15.28■□□□□ 0.04
VPS4A-201ENST00000254950 KDM6BO15054 1643 aa15.28■□□□□ 0.04
VPS4A-201ENST00000254950 MAST1Q9Y2H9 1570 aa15.28■□□□□ 0.04
VPS4A-201ENST00000254950 NEUROD2Q15784 382 aa15.28■□□□□ 0.04
VPS4A-201ENST00000254950 PNNQ9H307 717 aaKnown RBP15.28■□□□□ 0.04
VPS4A-201ENST00000254950 SOX12O15370 315 aa15.27■□□□□ 0.03
VPS4A-201ENST00000254950 HAP1P54257 671 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms