RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 ARID4BQ4LE39 1312 aaPredicted RBP34.68■■■■□ 3.14
RAB40C-201ENST00000248139 ARHGEF12Q9NZN5 1544 aa34.67■■■■□ 3.14
RAB40C-201ENST00000248139 ARHGAP5Q13017 1502 aa34.65■■■■□ 3.14
RAB40C-201ENST00000248139 ERICH6BQ5W0A0 696 aa34.65■■■■□ 3.14
RAB40C-201ENST00000248139 ERCC6L2Q5T890 1561 aa34.65■■■■□ 3.14
RAB40C-201ENST00000248139 TTC37Q6PGP7 1564 aa34.64■■■■□ 3.14
RAB40C-201ENST00000248139 PREX2Q70Z35 1606 aa34.64■■■■□ 3.14
RAB40C-201ENST00000248139 CCDC144AA2RUR9 1427 aa34.63■■■■□ 3.13
RAB40C-201ENST00000248139 SALL2Q9Y467 1007 aaPredicted RBP34.63■■■■□ 3.13
RAB40C-201ENST00000248139 NUDCQ9Y266 331 aa34.61■■■■□ 3.13
RAB40C-201ENST00000248139 CHD1O14646 1710 aa34.61■■■■□ 3.13
RAB40C-201ENST00000248139 SMG6Q86US8 1419 aaKnown RBP34.58■■■■□ 3.13
RAB40C-201ENST00000248139 PLA2R1Q13018 1463 aa34.58■■■■□ 3.13
RAB40C-201ENST00000248139 PLEKHH2Q8IVE3 1493 aa34.58■■■■□ 3.13
RAB40C-201ENST00000248139 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.58■■■■□ 3.132e-6■■■□□ 16.1
RAB40C-201ENST00000248139 RSPH4AQ5TD94 716 aa34.58■■■■□ 3.13
RAB40C-201ENST00000248139 PRAG1Q86YV5 1406 aa34.54■■■■□ 3.12
RAB40C-201ENST00000248139 MYBBP1AQ9BQG0 1328 aaKnown RBP34.51■■■■□ 3.11
RAB40C-201ENST00000248139 A2MP01023 1474 aa34.47■■■■□ 3.11
RAB40C-201ENST00000248139 CC2D1BQ5T0F9 858 aaKnown RBP34.46■■■■□ 3.11
RAB40C-201ENST00000248139 RALBP1Q15311 655 aa34.44■■■■□ 3.1
RAB40C-201ENST00000248139 TRPM1Q7Z4N2 1603 aa34.43■■■■□ 3.1
RAB40C-201ENST00000248139 DISP3Q9P2K9 1392 aa34.42■■■■□ 3.1
RAB40C-201ENST00000248139 BRD4O60885 1362 aaPredicted RBP34.4■■■■□ 3.1
RAB40C-201ENST00000248139 LRPPRCP42704 1394 aaKnown RBP34.4■■■■□ 3.1
RAB40C-201ENST00000248139 FANCIQ9NVI1 1328 aa34.39■■■■□ 3.1
RAB40C-201ENST00000248139 PER1O15534 1290 aaPredicted RBP34.39■■■■□ 3.1
RAB40C-201ENST00000248139 TESK2Q96S53 571 aa34.38■■■■□ 3.09
RAB40C-201ENST00000248139 CCDC136Q96JN2 1154 aa34.38■■■■□ 3.09
RAB40C-201ENST00000248139 ABCC2Q92887 1545 aa34.37■■■■□ 3.09
RAB40C-201ENST00000248139 RNF123Q5XPI4 1314 aa34.37■■■■□ 3.09
RAB40C-201ENST00000248139 UNC13BO14795 1591 aa34.36■■■■□ 3.09
RAB40C-201ENST00000248139 MYO5CQ9NQX4 1742 aa34.35■■■■□ 3.09
RAB40C-201ENST00000248139 KTN1Q86UP2 1357 aaKnown RBP34.35■■■■□ 3.09
RAB40C-201ENST00000248139 E9PCH4 1651 aa34.35■■■■□ 3.09
RAB40C-201ENST00000248139 PANK3Q9H999 370 aa34.35■■■■□ 3.09
RAB40C-201ENST00000248139 SHROOM2Q13796 1616 aa34.34■■■■□ 3.09
RAB40C-201ENST00000248139 AFAP1Q8N556 730 aa34.34■■■■□ 3.09
RAB40C-201ENST00000248139 NLRP13Q86W25 1043 aa34.33■■■■□ 3.09
RAB40C-201ENST00000248139 MAST1Q9Y2H9 1570 aa34.33■■■■□ 3.09
RAB40C-201ENST00000248139 EFCAB2Q5VUJ9 269 aa34.32■■■■□ 3.09
RAB40C-201ENST00000248139 TRAPPC8Q9Y2L5 1435 aa34.32■■■■□ 3.08
RAB40C-201ENST00000248139 PARD3Q8TEW0 1356 aa34.3■■■■□ 3.08
RAB40C-201ENST00000248139 GPRASP1Q5JY77 1395 aa34.28■■■■□ 3.08
RAB40C-201ENST00000248139 IQGAP3Q86VI3 1631 aa34.27■■■■□ 3.08
RAB40C-201ENST00000248139 CDCA7LQ96GN5 454 aa34.27■■■■□ 3.08
RAB40C-201ENST00000248139 PLCH2O75038 1416 aa34.27■■■■□ 3.08
RAB40C-201ENST00000248139 DUOX2Q9NRD8 1548 aa34.25■■■■□ 3.07
RAB40C-201ENST00000248139 PLXNC1O60486 1568 aa34.24■■■■□ 3.07
RAB40C-201ENST00000248139 ERBINQ96RT1 1412 aa34.24■■■■□ 3.07
RAB40C-201ENST00000248139 COL17A1Q9UMD9 1497 aaPredicted RBP34.23■■■■□ 3.07
RAB40C-201ENST00000248139 ERICH6Q7L0X2 663 aa34.22■■■■□ 3.07
RAB40C-201ENST00000248139 TMF1P82094 1093 aa34.21■■■■□ 3.07
RAB40C-201ENST00000248139 PRDM15P57071 1507 aaPredicted RBP34.2■■■■□ 3.07
RAB40C-201ENST00000248139 ZCCHC11Q5TAX3 1644 aaKnown RBP34.2■■■■□ 3.07
RAB40C-201ENST00000248139 SPAG9O60271 1321 aaKnown RBP34.19■■■■□ 3.06
RAB40C-201ENST00000248139 EXOC6Q8TAG9 804 aa34.19■■■■□ 3.06
RAB40C-201ENST00000248139 RCAN3Q9UKA8 241 aa34.17■■■■□ 3.06
RAB40C-201ENST00000248139 RRP1P56182 461 aaKnown RBP34.17■■■■□ 3.06
RAB40C-201ENST00000248139 MYT1LQ9UL68 1186 aa34.17■■■■□ 3.06
RAB40C-201ENST00000248139 MAGI2Q86UL8 1455 aa34.12■■■■□ 3.05
RAB40C-201ENST00000248139 ABCC1P33527 1531 aa34.11■■■■□ 3.05
RAB40C-201ENST00000248139 PLIN1O60240 522 aa34.1■■■■□ 3.05
RAB40C-201ENST00000248139 ATP10AO60312 1499 aa34.09■■■■□ 3.05
RAB40C-201ENST00000248139 EIF2AK4Q9P2K8 1649 aaKnown RBP34.04■■■■□ 3.04
RAB40C-201ENST00000248139 ADAMTS8Q9UP79 889 aa34.03■■■■□ 3.04
RAB40C-201ENST00000248139 LAMC1P11047 1609 aa34.02■■■■□ 3.04
RAB40C-201ENST00000248139 KIF3BO15066 747 aa34.02■■■■□ 3.04
RAB40C-201ENST00000248139 WASHC2CQ9Y4E1 1318 aa34■■■■□ 3.03
RAB40C-201ENST00000248139 KNSTRNQ9Y448 316 aa33.99■■■■□ 3.03
RAB40C-201ENST00000248139 PAK3O75914 559 aaPredicted RBP33.97■■■■□ 3.03
RAB40C-201ENST00000248139 CLASP1Q7Z460 1538 aa33.97■■■■□ 3.03
RAB40C-201ENST00000248139 PDE3BQ13370 1112 aa33.97■■■■□ 3.03
RAB40C-201ENST00000248139 WDR7Q9Y4E6 1490 aa33.96■■■■□ 3.03
RAB40C-201ENST00000248139 UHRF1BP1LA0JNW5 1464 aa33.95■■■■□ 3.02
RAB40C-201ENST00000248139 ZFYVE16Q7Z3T8 1539 aa33.94■■■■□ 3.02
RAB40C-201ENST00000248139 MADDQ8WXG6 1647 aa33.93■■■■□ 3.02
RAB40C-201ENST00000248139 PPP2R1AP30153 589 aa33.93■■■■□ 3.02
RAB40C-201ENST00000248139 RNF17Q9BXT8 1623 aaKnown RBP33.93■■■■□ 3.02
RAB40C-201ENST00000248139 SCAPERQ9BY12 1400 aa33.93■■■■□ 3.02
RAB40C-201ENST00000248139 SKAP1Q86WV1 359 aa33.92■■■■□ 3.02
RAB40C-201ENST00000248139 CLTCL1P53675 1640 aa33.91■■■■□ 3.02
RAB40C-201ENST00000248139 AMER1Q5JTC6 1135 aaPredicted RBP33.91■■■■□ 3.02
RAB40C-201ENST00000248139 BLMP54132 1417 aaPredicted RBP33.9■■■■□ 3.02
RAB40C-201ENST00000248139 CFAP70Q5T0N1 1121 aa33.9■■■■□ 3.02
RAB40C-201ENST00000248139 TRPM2O94759 1503 aa33.87■■■■□ 3.01
RAB40C-201ENST00000248139 UGGT1Q9NYU2 1555 aa33.87■■■■□ 3.01
RAB40C-201ENST00000248139 FANCAO15360 1455 aa33.87■■■■□ 3.01
RAB40C-201ENST00000248139 NOP58Q9Y2X3 529 aaKnown RBP33.87■■■■□ 3.01
RAB40C-201ENST00000248139 RTEL1-TNFRSF6BF6WH68 1400 aa33.86■■■■□ 3.01
RAB40C-201ENST00000248139 C20orf194Q5TEA3 1177 aa33.85■■■■□ 3.01
RAB40C-201ENST00000248139 CRBNQ96SW2 442 aa33.85■■■■□ 3.01
RAB40C-201ENST00000248139 PTPRTO14522 1441 aa33.84■■■■□ 3.01
RAB40C-201ENST00000248139 WDR43Q15061 677 aaKnown RBP eCLIP33.84■■■■□ 3.01
RAB40C-201ENST00000248139 SPHKAPQ2M3C7 1700 aa33.83■■■■□ 3.01
RAB40C-201ENST00000248139 SCAF11Q99590 1463 aaKnown RBP33.83■■■■□ 3.01
RAB40C-201ENST00000248139 ADGRF5Q8IZF2 1346 aa33.83■■■■□ 3.01
RAB40C-201ENST00000248139 IQGAP1P46940 1657 aa33.82■■■■□ 3
RAB40C-201ENST00000248139 NPM2Q86SE8 214 aaKnown RBP33.82■■■■□ 3
RAB40C-201ENST00000248139 CCDC146Q8IYE0 955 aa33.82■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms