RNA–Protein interactions for RNA: ENSMUST00000108531.7

Nup88-203, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,453 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-203ENSMUST00000108531 Bcl11aQ9QYE3 773 aa17.39■□□□□ 0.37
Nup88-203ENSMUST00000108531 Pak3Q61036 559 aa17.38■□□□□ 0.37
Nup88-203ENSMUST00000108531 Gapvd1Q6PAR5 1458 aa17.38■□□□□ 0.37
Nup88-203ENSMUST00000108531 Dnmt1P13864 1620 aaKnown RBP17.37■□□□□ 0.37
Nup88-203ENSMUST00000108531 Fam208aQ69ZR9 1610 aaKnown RBP17.37■□□□□ 0.37
Nup88-203ENSMUST00000108531 Fancd2Q80V62 1450 aa17.35■□□□□ 0.37
Nup88-203ENSMUST00000108531 Rrbp1Q99PL5 1605 aaKnown RBP17.35■□□□□ 0.37
Nup88-203ENSMUST00000108531 Setd1aE9PYH6 1716 aa17.35■□□□□ 0.37
Nup88-203ENSMUST00000108531 DiexfQ8BTT6 772 aaKnown RBP17.35■□□□□ 0.37
Nup88-203ENSMUST00000108531 Ssh2Q5SW75 1423 aa17.34■□□□□ 0.37
Nup88-203ENSMUST00000108531 Kank1E9Q238 1360 aa17.34■□□□□ 0.37
Nup88-203ENSMUST00000108531 Egfem1Q8C088 590 aa17.33■□□□□ 0.36
Nup88-203ENSMUST00000108531 Clstn2Q9ER65 966 aa17.33■□□□□ 0.36
Nup88-203ENSMUST00000108531 Kdm5cP41230 1554 aa17.33■□□□□ 0.36
Nup88-203ENSMUST00000108531 Eif4g3Q80XI3 1579 aaKnown RBP17.33■□□□□ 0.36
Nup88-203ENSMUST00000108531 Rusc2Q80U22 1514 aa17.33■□□□□ 0.36
Nup88-203ENSMUST00000108531 Neo1P97798 1493 aa17.33■□□□□ 0.36
Nup88-203ENSMUST00000108531 Tubgcp6G5E8P0 1769 aa17.33■□□□□ 0.36
Nup88-203ENSMUST00000108531 Mast1Q9R1L5 1570 aa17.32■□□□□ 0.36
Nup88-203ENSMUST00000108531 Anp32bQ9EST5 272 aaKnown RBP17.31■□□□□ 0.36
Nup88-203ENSMUST00000108531 Jph4Q80WT0 628 aa17.3■□□□□ 0.36
Nup88-203ENSMUST00000108531 Tcerg1Q8CGF7 1100 aaKnown RBP17.3■□□□□ 0.36
Nup88-203ENSMUST00000108531 Dnajc5bQ9CQ94 199 aa17.3■□□□□ 0.36
Nup88-203ENSMUST00000108531 Gm32742A0A1B0GT42 1604 aa17.3■□□□□ 0.36
Nup88-203ENSMUST00000108531 Slc4a3P16283 1227 aa17.3■□□□□ 0.36
Nup88-203ENSMUST00000108531 Rpgrip1lQ8CG73 1264 aa17.3■□□□□ 0.36
Nup88-203ENSMUST00000108531 Mink1Q9JM52 1308 aa17.29■□□□□ 0.36
Nup88-203ENSMUST00000108531 Cd109Q8R422 1442 aa17.28■□□□□ 0.36
Nup88-203ENSMUST00000108531 Zscan21Q07231 555 aa17.28■□□□□ 0.36
Nup88-203ENSMUST00000108531 Atp7aQ64430 1491 aa17.28■□□□□ 0.36
Nup88-203ENSMUST00000108531 Neurl4Q5NCX5 1563 aa17.27■□□□□ 0.36
Nup88-203ENSMUST00000108531 Zmym4A2A791 1549 aaKnown RBP17.27■□□□□ 0.36
Nup88-203ENSMUST00000108531 Arhgap5P97393 1501 aa17.27■□□□□ 0.36
Nup88-203ENSMUST00000108531 Erbb3Q61526 1339 aa17.27■□□□□ 0.36
Nup88-203ENSMUST00000108531 Kcnh8P59111 1102 aa17.27■□□□□ 0.35
Nup88-203ENSMUST00000108531 Tarbp1E9Q368 1579 aa17.26■□□□□ 0.35
Nup88-203ENSMUST00000108531 Upf2A2AT37 1269 aaKnown RBP17.26■□□□□ 0.35
Nup88-203ENSMUST00000108531 Fkbp15Q6P9Q6 1216 aaKnown RBP17.26■□□□□ 0.35
Nup88-203ENSMUST00000108531 Rrp7aQ9D1C9 280 aaKnown RBP17.26■□□□□ 0.35
Nup88-203ENSMUST00000108531 Ppip5k1A2ARP1 1436 aa17.26■□□□□ 0.35
Nup88-203ENSMUST00000108531 Ttbk1Q6PCN3 1308 aa17.26■□□□□ 0.35
Nup88-203ENSMUST00000108531 Rnf17Q99MV7 1640 aa17.26■□□□□ 0.35
Nup88-203ENSMUST00000108531 Mak16Q8BGS0 296 aaKnown RBP17.25■□□□□ 0.35
Nup88-203ENSMUST00000108531 Zfp444Q3TDV8 331 aaKnown RBP17.24■□□□□ 0.35
Nup88-203ENSMUST00000108531 Trappc8E9PWG2 1437 aa17.23■□□□□ 0.35
Nup88-203ENSMUST00000108531 Cfap74Q3UY96 1578 aa17.23■□□□□ 0.35
Nup88-203ENSMUST00000108531 Zbtb7cQ8VCZ7 619 aa17.22■□□□□ 0.35
Nup88-203ENSMUST00000108531 Plch2A2AP18 1501 aa17.22■□□□□ 0.35
Nup88-203ENSMUST00000108531 Ipo9Q91YE6 1041 aa17.21■□□□□ 0.35
Nup88-203ENSMUST00000108531 Hecw1Q8K4P8 1604 aa17.21■□□□□ 0.35
Nup88-203ENSMUST00000108531 Pdcd11Q6NS46 1862 aaKnown RBP17.19■□□□□ 0.34
Nup88-203ENSMUST00000108531 Q7TT23 1179 aa17.19■□□□□ 0.34
Nup88-203ENSMUST00000108531 Sart1Q9Z315 806 aaKnown RBP17.19■□□□□ 0.34
Nup88-203ENSMUST00000108531 Adamts13Q769J6 1426 aa17.18■□□□□ 0.34
Nup88-203ENSMUST00000108531 PrxO55103 1391 aa17.18■□□□□ 0.34
Nup88-203ENSMUST00000108531 AknaQ80VW7 1404 aa17.18■□□□□ 0.34
Nup88-203ENSMUST00000108531 NeflP08551 543 aa17.18■□□□□ 0.34
Nup88-203ENSMUST00000108531 Zbtb4Q5F293 982 aa17.18■□□□□ 0.34
Nup88-203ENSMUST00000108531 Prkrip1Q9CWV6 186 aaKnown RBP17.17■□□□□ 0.34
Nup88-203ENSMUST00000108531 Ifit1bl1D3Z6F0 470 aa17.16■□□□□ 0.34
Nup88-203ENSMUST00000108531 Pank3Q8R2W9 370 aa17.16■□□□□ 0.34
Nup88-203ENSMUST00000108531 Tex14Q7M6U3 1450 aa17.16■□□□□ 0.34
Nup88-203ENSMUST00000108531 TnikP83510 1323 aa17.16■□□□□ 0.34
Nup88-203ENSMUST00000108531 Cep170Q6A065 1588 aa17.16■□□□□ 0.34
Nup88-203ENSMUST00000108531 Robo2Q7TPD3 1470 aa17.15■□□□□ 0.34
Nup88-203ENSMUST00000108531 Ifnlr1Q8CGK5 535 aa17.15■□□□□ 0.34
Nup88-203ENSMUST00000108531 Ccdc27Q3V036 639 aa17.14■□□□□ 0.34
Nup88-203ENSMUST00000108531 Arid4bA2CG63 1314 aaKnown RBP17.14■□□□□ 0.33
Nup88-203ENSMUST00000108531 Fgd6Q69ZL1 1399 aa17.13■□□□□ 0.33
Nup88-203ENSMUST00000108531 Inpp5dQ9ES52 1191 aa17.13■□□□□ 0.33
Nup88-203ENSMUST00000108531 AI481877A2ALV5 1481 aa17.13■□□□□ 0.33
Nup88-203ENSMUST00000108531 Kiaa1210E9Q0C6 1637 aa17.13■□□□□ 0.33
Nup88-203ENSMUST00000108531 Sbno1Q689Z5 1390 aa17.13■□□□□ 0.33
Nup88-203ENSMUST00000108531 Abcc3B2RX12 1523 aa17.12■□□□□ 0.33
Nup88-203ENSMUST00000108531 Zscan10Q3URR7 782 aa17.12■□□□□ 0.33
Nup88-203ENSMUST00000108531 Rad21Q61550 635 aaKnown RBP17.12■□□□□ 0.33
Nup88-203ENSMUST00000108531 Spag9Q58A65 1321 aaKnown RBP17.12■□□□□ 0.33
Nup88-203ENSMUST00000108531 Cdc42bpbQ7TT50 1713 aa17.1■□□□□ 0.33
Nup88-203ENSMUST00000108531 Edc4Q3UJB9 1406 aaKnown RBP17.1■□□□□ 0.33
Nup88-203ENSMUST00000108531 Tulp4Q9JIL5 1547 aa17.1■□□□□ 0.33
Nup88-203ENSMUST00000108531 Prdm16A2A935 1275 aa17.1■□□□□ 0.33
Nup88-203ENSMUST00000108531 Tmf1B9EKI3 1091 aa17.1■□□□□ 0.33
Nup88-203ENSMUST00000108531 Gm14025A2AP89 1413 aa17.1■□□□□ 0.33
Nup88-203ENSMUST00000108531 NhsB1AV60 1647 aa17.09■□□□□ 0.33
Nup88-203ENSMUST00000108531 Hdac5Q9Z2V6 1113 aa17.09■□□□□ 0.33
Nup88-203ENSMUST00000108531 Ttc41Q692V3 1318 aa17.09■□□□□ 0.33
Nup88-203ENSMUST00000108531 Pde4cQ3UEI1 686 aa17.08■□□□□ 0.32
Nup88-203ENSMUST00000108531 Clasp1Q80TV8 1535 aaKnown RBP17.08■□□□□ 0.32
Nup88-203ENSMUST00000108531 Nsd2Q8BVE8 1365 aa17.07■□□□□ 0.32
Nup88-203ENSMUST00000108531 Mroh3A0A1D5RM54 893 aa17.07■□□□□ 0.32
Nup88-203ENSMUST00000108531 Pola1P33609 1465 aa17.06■□□□□ 0.32
Nup88-203ENSMUST00000108531 Gm16486A0A1D5RMD1 1434 aa17.06■□□□□ 0.32
Nup88-203ENSMUST00000108531 Mbd3Q9Z2D8 285 aaKnown RBP17.06■□□□□ 0.32
Nup88-203ENSMUST00000108531 Usp54Q8BL06 1588 aaKnown RBP17.04■□□□□ 0.32
Nup88-203ENSMUST00000108531 Kif16bB1AVY7 1312 aa17.04■□□□□ 0.32
Nup88-203ENSMUST00000108531 Ak9G3UYQ4 1894 aa17.04■□□□□ 0.32
Nup88-203ENSMUST00000108531 ShprhQ7TPQ3 1674 aa17.03■□□□□ 0.32
Nup88-203ENSMUST00000108531 Kif1bQ60575 1816 aaKnown RBP17.03■□□□□ 0.32
Nup88-203ENSMUST00000108531 AnkarA2RT91 1465 aa17.03■□□□□ 0.32
Nup88-203ENSMUST00000108531 Abca8bQ8K440 1620 aa17.02■□□□□ 0.32
Retrieved 100 of 22,080 RNA–protein pairs in 14.7 ms