RNA–Protein interactions for RNA: YML107C

PML39, Transcript of Protein required for nuclear retention of unspliced pre-mRNAs, yeast

Gene PML39, Length 1,005 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PML39	YML107C	YOL075C	Q08234	1294 aa		3.13	□□□□□ -1.91
PML39	YML107C	YPQ1	Q12010	308 aa		3.13	□□□□□ -1.91
PML39	YML107C	CHC1	P22137	1653 aa	Known RBP	3.13	□□□□□ -1.91
PML39	YML107C	CBP6	P07253	162 aa	Predicted RBP	3.12	□□□□□ -1.91
PML39	YML107C	RPL23A	P0CX41	137 aa	Known RBP	3.12	□□□□□ -1.91
PML39	YML107C	RPL23B	P0CX42	137 aa	Known RBP	3.12	□□□□□ -1.91
PML39	YML107C	ASP3-2	P0CX77	362 aa		3.12	□□□□□ -1.91
PML39	YML107C	ASP3-3	P0CX78	362 aa		3.12	□□□□□ -1.91
PML39	YML107C	ASP3-4	P0CX79	362 aa		3.12	□□□□□ -1.91
PML39	YML107C	ASP3-1	P0CZ17	362 aa		3.12	□□□□□ -1.91
PML39	YML107C	THR4	P16120	514 aa	Known RBP	3.12	□□□□□ -1.91
PML39	YML107C	CHA1	P25379	360 aa	Known RBP	3.12	□□□□□ -1.91
PML39	YML107C	VPH1	P32563	840 aa	Known RBP	3.12	□□□□□ -1.91
PML39	YML107C	YBR241C	P38142	488 aa		3.12	□□□□□ -1.91
PML39	YML107C	SEO1	P39709	593 aa		3.12	□□□□□ -1.91
PML39	YML107C	ECM11	Q04110	302 aa		3.12	□□□□□ -1.91
PML39	YML107C	YDR115W	Q04598	105 aa		3.12	□□□□□ -1.91
PML39	YML107C	GAS2	Q06135	555 aa		3.12	□□□□□ -1.91
PML39	YML107C	YLR177W	Q06251	628 aa		3.12	□□□□□ -1.91
PML39	YML107C	NFI1	Q12216	726 aa		3.12	□□□□□ -1.91
PML39	YML107C	SFM1	Q12314	213 aa		3.12	□□□□□ -1.91
PML39	YML107C	SPT7	P35177	1332 aa		3.12	□□□□□ -1.91
PML39	YML107C	ULS1	Q08562	1619 aa		3.11	□□□□□ -1.91
PML39	YML107C	HMX1	P32339	317 aa		3.11	□□□□□ -1.91
PML39	YML107C	VAM7	P32912	316 aa		3.11	□□□□□ -1.91
PML39	YML107C	PTK1	P36002	662 aa	Predicted RBP	3.11	□□□□□ -1.91
PML39	YML107C	YKR015C	P36111	568 aa		3.11	□□□□□ -1.91
PML39	YML107C	ADH5	P38113	351 aa	Known RBP	3.11	□□□□□ -1.91
PML39	YML107C	LCP5	P40079	357 aa	Predicted RBP	3.11	□□□□□ -1.91
PML39	YML107C	AQR1	P53943	586 aa		3.11	□□□□□ -1.91
PML39	YML107C	SMP3	Q04174	516 aa		3.11	□□□□□ -1.91
PML39	YML107C	YPR078C	Q06813	372 aa		3.11	□□□□□ -1.91
PML39	YML107C	LDB17	Q12342	491 aa		3.11	□□□□□ -1.91
PML39	YML107C	DET1	Q99288	334 aa	Known RBP	3.11	□□□□□ -1.91
PML39	YML107C	NUP159	P40477	1460 aa		3.1	□□□□□ -1.91
PML39	YML107C	GDB1	Q06625	1536 aa		3.1	□□□□□ -1.91
PML39	YML107C	RDS1	P25611	832 aa		3.1	□□□□□ -1.91
PML39	YML107C	RPS0A	P32905	252 aa	Known RBP	3.1	□□□□□ -1.91
PML39	YML107C	YPT35	P38815	214 aa	Known RBP	3.1	□□□□□ -1.91
PML39	YML107C	RBG1	P39729	369 aa		3.1	□□□□□ -1.91
PML39	YML107C	ALD5	P40047	520 aa	Known RBP	3.1	□□□□□ -1.91
PML39	YML107C	KEG1	P43614	200 aa		3.1	□□□□□ -1.91
PML39	YML107C	VHT1	P53241	593 aa		3.1	□□□□□ -1.91
PML39	YML107C	VAC7	P53950	1165 aa		3.1	□□□□□ -1.91
PML39	YML107C	UTP6	Q02354	440 aa	Known RBP	3.1	□□□□□ -1.91
PML39	YML107C	RLP24	Q07915	199 aa	Known RBP	3.1	□□□□□ -1.91
PML39	YML107C	ATP16	Q12165	160 aa		3.1	□□□□□ -1.91
PML39	YML107C	MCT1	Q12283	360 aa		3.1	□□□□□ -1.91
PML39	YML107C	RPL21B	Q12672	160 aa	Known RBP	3.1	□□□□□ -1.91
PML39	YML107C	NBL1	Q3E7Y6	73 aa		3.1	□□□□□ -1.91
PML39	YML107C	RPO21	P04050	1733 aa	Known RBP	3.1	□□□□□ -1.91
PML39	YML107C	TY2B-B	Q12491	1770 aa		3.1	□□□□□ -1.91
PML39	YML107C	ANP1	P32629	500 aa		3.09	□□□□□ -1.91
PML39	YML107C	HEM14	P40012	539 aa		3.09	□□□□□ -1.91
PML39	YML107C	CUE3	P53137	624 aa	Known RBP	3.09	□□□□□ -1.91
PML39	YML107C	LST7	P53237	242 aa		3.09	□□□□□ -1.91
PML39	YML107C	YNL143C	P53908	130 aa		3.09	□□□□□ -1.91
PML39	YML107C	RNH201	P53942	307 aa		3.09	□□□□□ -1.91
PML39	YML107C	SLT2	Q00772	484 aa		3.09	□□□□□ -1.91
PML39	YML107C	RPL21A	Q02753	160 aa	Known RBP	3.09	□□□□□ -1.91
PML39	YML107C	DBP9	Q06218	594 aa	Known RBP	3.09	□□□□□ -1.91
PML39	YML107C	ARR1	Q06596	294 aa		3.09	□□□□□ -1.91
PML39	YML107C	APC5	Q08683	685 aa		3.09	□□□□□ -1.91
PML39	YML107C	SRO7	Q12038	1033 aa		3.09	□□□□□ -1.91
PML39	YML107C	UBA3	Q99344	299 aa		3.09	□□□□□ -1.91
PML39	YML107C	ADH1	P00330	348 aa	Known RBP	3.08	□□□□□ -1.92
PML39	YML107C	STE3	P06783	470 aa		3.08	□□□□□ -1.92
PML39	YML107C	UNG1	P12887	359 aa		3.08	□□□□□ -1.92
PML39	YML107C	CKI1	P20485	582 aa		3.08	□□□□□ -1.92
PML39	YML107C	MIR1	P23641	311 aa	Known RBP	3.08	□□□□□ -1.92
PML39	YML107C	MRPL27	P36526	146 aa	Predicted RBP	3.08	□□□□□ -1.92
PML39	YML107C	YFL012W	P43580	148 aa		3.08	□□□□□ -1.92
PML39	YML107C	AIM23	P47015	356 aa		3.08	□□□□□ -1.92
PML39	YML107C	PGU1	P47180	361 aa		3.08	□□□□□ -1.92
PML39	YML107C	VEL1	P53058	206 aa		3.08	□□□□□ -1.92
PML39	YML107C	YGR018C	P53211	109 aa		3.08	□□□□□ -1.92
PML39	YML107C	PRM1	P53835	661 aa		3.08	□□□□□ -1.92
PML39	YML107C	YOR012W	Q12351	137 aa		3.08	□□□□□ -1.92
PML39	YML107C	SFG1	Q12507	346 aa		3.08	□□□□□ -1.92
PML39	YML107C	ARF2	P19146	181 aa	Known RBP	3.07	□□□□□ -1.92
PML39	YML107C	OPI1	P21957	404 aa		3.07	□□□□□ -1.92
PML39	YML107C	GRR1	P24814	1151 aa		3.07	□□□□□ -1.92
PML39	YML107C	ECT1	P33412	323 aa		3.07	□□□□□ -1.92
PML39	YML107C	YER184C	P39961	794 aa		3.07	□□□□□ -1.92
PML39	YML107C	YIL089W	P40500	205 aa		3.07	□□□□□ -1.92
PML39	YML107C	YNL320W	P42840	284 aa		3.07	□□□□□ -1.92
PML39	YML107C	BIO3	P50277	480 aa		3.07	□□□□□ -1.92
PML39	YML107C	FLC3	P53121	802 aa		3.07	□□□□□ -1.92
PML39	YML107C	CDH1	P53197	566 aa		3.07	□□□□□ -1.92
PML39	YML107C	AIM45	Q12480	344 aa	Known RBP	3.07	□□□□□ -1.92
PML39	YML107C	YLL053C	P0CD98	152 aa		3.06	□□□□□ -1.92
PML39	YML107C	RPS16A	P0CX51	143 aa	Known RBP	3.06	□□□□□ -1.92
PML39	YML107C	RPS16B	P0CX52	143 aa	Known RBP	3.06	□□□□□ -1.92
PML39	YML107C	FAR1	P21268	830 aa		3.06	□□□□□ -1.92
PML39	YML107C	POT1	P27796	417 aa	Known RBP RIP-Chip data	3.06	□□□□□ -1.92	not detected
PML39	YML107C	ZUO1	P32527	433 aa	Known RBP	3.06	□□□□□ -1.92
PML39	YML107C	PDC2	P32896	925 aa		3.06	□□□□□ -1.92
PML39	YML107C	SIF2	P38262	535 aa		3.06	□□□□□ -1.92
PML39	YML107C	PES4	P39684	611 aa		3.06	□□□□□ -1.92
PML39	YML107C	STB1	P42845	420 aa		3.06	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 48.3 ms