RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	PCF11	P39081	626 aa	Predicted RBP	4.25	□□□□□ -1.73
NMD3	YHR170W	ELO1	P39540	310 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	AIM2	P39721	246 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	YAL037W	P39728	267 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	RBG1	P39729	369 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	FMP52	P40008	231 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	LRO1	P40345	661 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	SNL1	P40548	159 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	PAC11	P40960	533 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	PRM10	P42946	383 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	SDT1	P53078	280 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	YNL181W	P53878	407 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	ATG21	Q02887	496 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	RNH1	Q04740	348 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	LOT6	Q07923	191 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	LYS21	Q12122	440 aa	Known RBP	4.25	□□□□□ -1.73
NMD3	YHR170W	MHF2	Q3E829	80 aa		4.25	□□□□□ -1.73
NMD3	YHR170W	URE2	P23202	354 aa	Known RBP	4.24	□□□□□ -1.73
NMD3	YHR170W	ERG1	P32476	496 aa	Known RBP	4.24	□□□□□ -1.73
NMD3	YHR170W	GSH1	P32477	678 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	GDH2	P33327	1092 aa	Known RBP	4.24	□□□□□ -1.73
NMD3	YHR170W	SKN1	P33336	771 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	MNN2	P38069	597 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	MNN9	P39107	395 aa	Known RBP	4.24	□□□□□ -1.73
NMD3	YHR170W	YEL057C	P39983	233 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	ATF1	P40353	525 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	YRB2	P40517	327 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	AGP3	P43548	558 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	RAD17	P48581	401 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	ROG1	P53118	685 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	YNR068C	P53754	272 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	GOR1	P53839	350 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	DSL1	P53847	754 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	YMR099C	Q03161	297 aa	Known RBP	4.24	□□□□□ -1.73
NMD3	YHR170W	PHO92	Q06390	306 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	FMP45	Q07651	309 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	COS7	Q07788	383 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	THP1	Q08231	455 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	GET4	Q12125	312 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	POM34	Q12445	299 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	YKL033W-A	Q86ZR7	236 aa		4.24	□□□□□ -1.73
NMD3	YHR170W	GAL3	P13045	520 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
NMD3	YHR170W	CLB3	P24870	427 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	CTR86	P25355	563 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	DMC1	P25453	334 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	POL4	P25615	582 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	CWH43	P25618	953 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	FEN2	P25621	512 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	SAC1	P32368	623 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	ASC1	P38011	319 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	RIB1	P38066	345 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	EHT1	P38295	451 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	YHR097C	P38809	366 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	FAU1	P40099	211 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	PDS1	P40316	373 aa	Predicted RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	MPM1	P40364	252 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	LYS12	P40495	371 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	RPL10	P41805	221 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	TAF4	P50105	388 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	CDH1	P53197	566 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	RHO3	Q00245	231 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	YDR239C	Q03780	787 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	APC4	Q04601	652 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	SSQ1	Q05931	657 aa	Predicted RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	BOP2	Q06150	570 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	TEN1	Q07921	160 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	DCI1	Q08558	271 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	RPN8	Q08723	338 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	MMT2	Q08970	484 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	RKM5	Q12367	367 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	YDL199C	Q12407	687 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	SKS1	Q12505	502 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	RRP12	Q12754	1228 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	TOR2	P32600	2474 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	MDM35	O60200	86 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	COR1	P07256	457 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	GAL7	P08431	366 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	FBA1	P14540	359 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	MER1	P16523	270 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	VPS33	P20795	691 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	BUB3	P26449	341 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	MKK1	P32490	508 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	MSS1	P32559	526 aa	Predicted RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	CYS4	P32582	507 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	CDC13	P32797	924 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	YME2	P32843	850 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	CDS1	P38221	457 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	MTG2	P38860	518 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	YHR177W	P38867	453 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	RIO2	P40160	425 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	VMA10	P48836	114 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	PEF1	P53238	335 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	IGO1	P53897	168 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	EGD1	Q02642	157 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	VBA4	Q04602	768 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	YMR226C	Q05016	267 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	RQC1	Q05468	723 aa	Known RBP	4.23	□□□□□ -1.73
NMD3	YHR170W	YOL107W	Q12239	342 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	YLR126C	Q12288	251 aa		4.23	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 22.1 ms