RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W SAM4Q08985 325 aaKnown RBP2.8□□□□□ -1.96
UPF3YGR072W IZH2Q12442 317 aa2.8□□□□□ -1.96
UPF3YGR072W PAA1Q12447 191 aaKnown RBP2.8□□□□□ -1.96
UPF3YGR072W STE2D6VTK4 431 aa2.79□□□□□ -1.96
UPF3YGR072W CAR2P07991 424 aaKnown RBP2.79□□□□□ -1.96
UPF3YGR072W LDS1P31379 325 aa2.79□□□□□ -1.96
UPF3YGR072W RIB7P33312 244 aa2.79□□□□□ -1.96
UPF3YGR072W BUD2P33314 1104 aa2.79□□□□□ -1.96
UPF3YGR072W RPC25P35718 212 aa2.79□□□□□ -1.96
UPF3YGR072W PEX18P38855 283 aa2.79□□□□□ -1.96
UPF3YGR072W CIN2P46670 268 aa2.79□□□□□ -1.96
UPF3YGR072W PNC1P53184 216 aaKnown RBP2.79□□□□□ -1.96
UPF3YGR072W PXR1P53335 271 aaPredicted RBP2.79□□□□□ -1.96
UPF3YGR072W DBP6P53734 629 aaKnown RBP2.79□□□□□ -1.96
UPF3YGR072W SPO19Q03029 223 aa2.79□□□□□ -1.96
UPF3YGR072W CSM3Q04659 317 aa2.79□□□□□ -1.96
UPF3YGR072W GAS2Q06135 555 aa2.79□□□□□ -1.96
UPF3YGR072W FDH1Q08911 376 aa2.79□□□□□ -1.96
UPF3YGR072W PLP2Q12017 286 aa2.79□□□□□ -1.96
UPF3YGR072W MRPL23Q12487 163 aaPredicted RBP2.79□□□□□ -1.96
UPF3YGR072W NAG1Q8TGN9 163 aa2.79□□□□□ -1.96
UPF3YGR072W STE7P06784 515 aa2.78□□□□□ -1.96
UPF3YGR072W RPL23AP0CX41 137 aaKnown RBP2.78□□□□□ -1.96
UPF3YGR072W RPL23BP0CX42 137 aaKnown RBP2.78□□□□□ -1.96
UPF3YGR072W AAT2P23542 418 aaKnown RBP2.78□□□□□ -1.96
UPF3YGR072W MEI5P32489 222 aa2.78□□□□□ -1.96
UPF3YGR072W PPQ1P32945 549 aa2.78□□□□□ -1.96
UPF3YGR072W COS9P36034 407 aa2.78□□□□□ -1.96
UPF3YGR072W INA22P40576 216 aa2.78□□□□□ -1.96
UPF3YGR072W CDC40P40968 455 aaPredicted RBP2.78□□□□□ -1.96
UPF3YGR072W COX16P47081 118 aa2.78□□□□□ -1.96
UPF3YGR072W EMC2P47133 292 aaKnown RBP2.78□□□□□ -1.96
UPF3YGR072W SHY1P53266 389 aa2.78□□□□□ -1.96
UPF3YGR072W CRH1P53301 507 aa2.78□□□□□ -1.96
UPF3YGR072W LAP3Q01532 483 aaKnown RBP RIP-Chip data2.78□□□□□ -1.96not detected
UPF3YGR072W ERV41Q04651 352 aa2.78□□□□□ -1.96
UPF3YGR072W FSH2Q05015 223 aa2.78□□□□□ -1.96
UPF3YGR072W BCP1Q06338 283 aa2.78□□□□□ -1.96
UPF3YGR072W ALE1Q08548 619 aa2.78□□□□□ -1.96
UPF3YGR072W GIT1P25346 518 aa2.77□□□□□ -1.97
UPF3YGR072W RPL5P26321 297 aaKnown RBP2.77□□□□□ -1.97
UPF3YGR072W RAD23P32628 398 aaKnown RBP2.77□□□□□ -1.97
UPF3YGR072W MRPL10P36520 322 aa2.77□□□□□ -1.97
UPF3YGR072W FET3P38993 636 aa2.77□□□□□ -1.97
UPF3YGR072W AIM10P39965 576 aaKnown RBP2.77□□□□□ -1.97
UPF3YGR072W EGT2P42835 1041 aa2.77□□□□□ -1.97
UPF3YGR072W CTK3P46963 296 aaPredicted RBP2.77□□□□□ -1.97
UPF3YGR072W GTO1P48239 356 aa2.77□□□□□ -1.97
UPF3YGR072W KEL2P50090 882 aa2.77□□□□□ -1.97
UPF3YGR072W UBX2Q04228 584 aa2.77□□□□□ -1.97
UPF3YGR072W YMR027WQ04371 470 aa2.77□□□□□ -1.97
UPF3YGR072W PAL1Q05518 499 aaKnown RBP2.77□□□□□ -1.97
UPF3YGR072W RRG7Q08774 242 aaPredicted RBP2.77□□□□□ -1.97
UPF3YGR072W SIA1Q12212 622 aa2.77□□□□□ -1.97
UPF3YGR072W RAD7P06779 565 aa2.76□□□□□ -1.97
UPF3YGR072W CTA1P15202 515 aa2.76□□□□□ -1.97
UPF3YGR072W RVS161P25343 265 aaKnown RBP2.76□□□□□ -1.97
UPF3YGR072W ICL1P28240 557 aaPredicted RBP2.76□□□□□ -1.97
UPF3YGR072W DEP1P31385 405 aa2.76□□□□□ -1.97
UPF3YGR072W HXT1P32465 570 aa2.76□□□□□ -1.97
UPF3YGR072W ANR2P36090 516 aaPredicted RBP2.76□□□□□ -1.97
UPF3YGR072W RFS1P38234 210 aaKnown RBP2.76□□□□□ -1.97
UPF3YGR072W OXA1P39952 402 aa2.76□□□□□ -1.97
UPF3YGR072W YER186CP40101 306 aa2.76□□□□□ -1.97
UPF3YGR072W YCH1P42937 148 aa2.76□□□□□ -1.97
UPF3YGR072W ATG18P43601 500 aa2.76□□□□□ -1.97
UPF3YGR072W BNS1P50084 137 aa2.76□□□□□ -1.97
UPF3YGR072W LSG1P53145 640 aaKnown RBP2.76□□□□□ -1.97
UPF3YGR072W RPN14P53196 417 aa2.76□□□□□ -1.97
UPF3YGR072W YNL260CP53846 198 aa2.76□□□□□ -1.97
UPF3YGR072W IRC4Q03036 179 aa2.76□□□□□ -1.97
UPF3YGR072W TRM82Q03774 444 aa2.76□□□□□ -1.97
UPF3YGR072W ECM18Q04623 453 aa2.76□□□□□ -1.97
UPF3YGR072W DDC1Q08949 612 aa2.76□□□□□ -1.97
UPF3YGR072W WTM1Q12363 437 aaKnown RBP2.76□□□□□ -1.97
UPF3YGR072W RRP36Q12481 300 aaPredicted RBP2.76□□□□□ -1.97
UPF3YGR072W SSA3P09435 649 aaKnown RBP2.75□□□□□ -1.97
UPF3YGR072W MIR1P23641 311 aaKnown RBP2.75□□□□□ -1.97
UPF3YGR072W CHA1P25379 360 aaKnown RBP2.75□□□□□ -1.97
UPF3YGR072W ZRT1P32804 376 aa2.75□□□□□ -1.97
UPF3YGR072W YKL070WP36087 169 aa2.75□□□□□ -1.97
UPF3YGR072W YHR035WP38769 630 aa2.75□□□□□ -1.97
UPF3YGR072W TDA11P38854 504 aa2.75□□□□□ -1.97
UPF3YGR072W PTI1P39927 425 aaPredicted RBP2.75□□□□□ -1.97
UPF3YGR072W MOB2P43563 287 aa2.75□□□□□ -1.97
UPF3YGR072W AIM23P47015 356 aa2.75□□□□□ -1.97
UPF3YGR072W MND1P53102 219 aa2.75□□□□□ -1.97
UPF3YGR072W MKC7P53379 596 aa2.75□□□□□ -1.97
UPF3YGR072W SLT2Q00772 484 aa2.75□□□□□ -1.97
UPF3YGR072W SKI8Q02793 397 aaPredicted RBP2.75□□□□□ -1.97
UPF3YGR072W YET2Q04210 160 aa2.75□□□□□ -1.97
UPF3YGR072W DTD1Q07648 150 aaKnown RBP2.75□□□□□ -1.97
UPF3YGR072W SFM1Q12314 213 aa2.75□□□□□ -1.97
UPF3YGR072W ADH2P00331 348 aaKnown RBP2.74□□□□□ -1.97
UPF3YGR072W MEK1P24719 497 aaPredicted RBP2.74□□□□□ -1.97
UPF3YGR072W CSM1P25651 190 aa2.74□□□□□ -1.97
UPF3YGR072W CDC50P25656 391 aa2.74□□□□□ -1.97
UPF3YGR072W URA10P30402 227 aa2.74□□□□□ -1.97
UPF3YGR072W ECT1P33412 323 aa2.74□□□□□ -1.97
UPF3YGR072W KTI12P34253 313 aaKnown RBP2.74□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 20.8 ms