RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	SPR6	Q01684	191 aa		4.89	□□□□□ -1.63
UBP9	YER098W	YDR541C	Q03049	344 aa		4.89	□□□□□ -1.63
UBP9	YER098W	TRM12	Q04235	462 aa		4.89	□□□□□ -1.63
UBP9	YER098W	SPH1	Q06160	661 aa		4.89	□□□□□ -1.63
UBP9	YER098W	YLR040C	Q07988	224 aa		4.89	□□□□□ -1.63
UBP9	YER098W	BRX1	Q08235	291 aa	Known RBP	4.89	□□□□□ -1.63
UBP9	YER098W	FRE3	Q08905	711 aa		4.89	□□□□□ -1.63
UBP9	YER098W	NSL1	Q12143	216 aa		4.89	□□□□□ -1.63
UBP9	YER098W	LEU9	Q12166	604 aa	Known RBP	4.89	□□□□□ -1.63
UBP9	YER098W	LAG2	Q92325	660 aa		4.89	□□□□□ -1.63
UBP9	YER098W	HIP1	P06775	603 aa		4.88	□□□□□ -1.63
UBP9	YER098W	IDH2	P28241	369 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	ZRT3	P34240	503 aa		4.88	□□□□□ -1.63
UBP9	YER098W	CSG2	P35206	410 aa		4.88	□□□□□ -1.63
UBP9	YER098W	MRPL3	P36516	390 aa		4.88	□□□□□ -1.63
UBP9	YER098W	MAK5	P38112	773 aa	Predicted RBP	4.88	□□□□□ -1.63
UBP9	YER098W	IST2	P38250	946 aa		4.88	□□□□□ -1.63
UBP9	YER098W	ARN1	P38731	627 aa		4.88	□□□□□ -1.63
UBP9	YER098W	YER034W	P40022	185 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	CIN1	P40987	1014 aa		4.88	□□□□□ -1.63
UBP9	YER098W	PHO86	P46956	311 aa		4.88	□□□□□ -1.63
UBP9	YER098W	YGR149W	P48236	432 aa		4.88	□□□□□ -1.63
UBP9	YER098W	PHO23	P50947	330 aa		4.88	□□□□□ -1.63
UBP9	YER098W	PYK2	P52489	506 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	ALT2	P52892	507 aa		4.88	□□□□□ -1.63
UBP9	YER098W	YGR127W	P53275	312 aa		4.88	□□□□□ -1.63
UBP9	YER098W	RHO5	P53879	331 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	ARK1	P53974	638 aa		4.88	□□□□□ -1.63
UBP9	YER098W	ARL3	Q02804	198 aa		4.88	□□□□□ -1.63
UBP9	YER098W	BCH1	Q05029	724 aa		4.88	□□□□□ -1.63
UBP9	YER098W	RAD52	P06778	471 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	WHI2	P12611	486 aa		4.88	□□□□□ -1.63
UBP9	YER098W	CSM1	P25651	190 aa		4.88	□□□□□ -1.63
UBP9	YER098W	CPR3	P25719	182 aa		4.88	□□□□□ -1.63
UBP9	YER098W	APE2	P32454	952 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	SDH3	P33421	198 aa		4.88	□□□□□ -1.63
UBP9	YER098W	SPT10	P35208	640 aa		4.88	□□□□□ -1.63
UBP9	YER098W	GMH1	P36125	273 aa		4.88	□□□□□ -1.63
UBP9	YER098W	YBR241C	P38142	488 aa		4.88	□□□□□ -1.63
UBP9	YER098W	SUL1	P38359	859 aa		4.88	□□□□□ -1.63
UBP9	YER098W	RBG1	P39729	369 aa		4.88	□□□□□ -1.63
UBP9	YER098W	ARG2	P40360	574 aa		4.88	□□□□□ -1.63
UBP9	YER098W	HXT9	P40885	567 aa		4.88	□□□□□ -1.63
UBP9	YER098W	RPN11	P43588	306 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	PTR3	P43606	678 aa		4.88	□□□□□ -1.63
UBP9	YER098W	NET1	P47035	1189 aa		4.88	□□□□□ -1.63
UBP9	YER098W	ASN2	P49090	572 aa	Known RBP	4.88	□□□□□ -1.63
UBP9	YER098W	COQ6	P53318	479 aa		4.88	□□□□□ -1.63
UBP9	YER098W	AAT1	Q01802	451 aa		4.88	□□□□□ -1.63
UBP9	YER098W	NUP49	Q02199	472 aa		4.88	□□□□□ -1.63
UBP9	YER098W	SNX41	Q04053	625 aa		4.88	□□□□□ -1.63
UBP9	YER098W	NEJ1	Q06148	342 aa		4.88	□□□□□ -1.63
UBP9	YER098W	YGK3	Q12222	375 aa	Predicted RBP	4.88	□□□□□ -1.63
UBP9	YER098W	TRM10	Q12400	293 aa		4.88	□□□□□ -1.63
UBP9	YER098W	PFK27	Q12471	397 aa	Predicted RBP	4.88	□□□□□ -1.63
UBP9	YER098W	ZPS1	Q12512	249 aa		4.88	□□□□□ -1.63
UBP9	YER098W	CMC2	Q3E7A4	109 aa		4.88	□□□□□ -1.63
UBP9	YER098W	YRF1-3	P0CX14	1859 aa		4.87	□□□□□ -1.63
UBP9	YER098W	YRF1-7	P0CX15	1859 aa		4.87	□□□□□ -1.63
UBP9	YER098W	YRF1-6	P53819	1859 aa		4.87	□□□□□ -1.63
UBP9	YER098W	UBR2	Q07963	1872 aa		4.87	□□□□□ -1.63
UBP9	YER098W	SUC2	P00724	532 aa		4.87	□□□□□ -1.63
UBP9	YER098W	PMA1	P05030	918 aa	Known RBP	4.87	□□□□□ -1.63
UBP9	YER098W	IMA3	P0CW40	589 aa		4.87	□□□□□ -1.63
UBP9	YER098W	IMA4	P0CW41	589 aa		4.87	□□□□□ -1.63
UBP9	YER098W	HRR25	P29295	494 aa	Known RBP	4.87	□□□□□ -1.63
UBP9	YER098W	MRPL9	P31334	269 aa		4.87	□□□□□ -1.63
UBP9	YER098W	OMA1	P36163	345 aa		4.87	□□□□□ -1.63
UBP9	YER098W	YBR056W	P38081	501 aa		4.87	□□□□□ -1.63
UBP9	YER098W	PRS2	P38620	318 aa	Known RBP	4.87	□□□□□ -1.63
UBP9	YER098W	NDT80	P38830	627 aa		4.87	□□□□□ -1.63
UBP9	YER098W	SOP4	P39543	234 aa	Predicted RBP	4.87	□□□□□ -1.63
UBP9	YER098W	IRC4	Q03036	179 aa		4.87	□□□□□ -1.63
UBP9	YER098W	HRD3	Q05787	833 aa		4.87	□□□□□ -1.63
UBP9	YER098W	THI7	Q05998	598 aa		4.87	□□□□□ -1.63
UBP9	YER098W	GPI11	Q06636	219 aa		4.87	□□□□□ -1.63
UBP9	YER098W	TEN1	Q07921	160 aa		4.87	□□□□□ -1.63
UBP9	YER098W	IMA2	Q08295	589 aa		4.87	□□□□□ -1.63
UBP9	YER098W	MHF1	Q3E835	90 aa		4.87	□□□□□ -1.63
UBP9	YER098W	HCM1	P25364	564 aa		4.86	□□□□□ -1.63
UBP9	YER098W	PEX34	P25584	144 aa		4.86	□□□□□ -1.63
UBP9	YER098W	YIM1	P28625	365 aa		4.86	□□□□□ -1.63
UBP9	YER098W	URA10	P30402	227 aa		4.86	□□□□□ -1.63
UBP9	YER098W	CBT1	P36038	271 aa	Predicted RBP	4.86	□□□□□ -1.63
UBP9	YER098W	ICS2	P38284	255 aa		4.86	□□□□□ -1.63
UBP9	YER098W	BIG1	P38813	335 aa		4.86	□□□□□ -1.63
UBP9	YER098W	WSS1	P38838	269 aa		4.86	□□□□□ -1.63
UBP9	YER098W	GTT1	P40582	234 aa		4.86	□□□□□ -1.63
UBP9	YER098W	SMX3	P54999	86 aa	Predicted RBP	4.86	□□□□□ -1.63
UBP9	YER098W	SPO77	Q06134	477 aa		4.86	□□□□□ -1.63
UBP9	YER098W	MHR1	Q06630	226 aa		4.86	□□□□□ -1.63
UBP9	YER098W	AIM39	Q08223	395 aa		4.86	□□□□□ -1.63
UBP9	YER098W	AHA1	Q12449	350 aa	Known RBP	4.86	□□□□□ -1.63
UBP9	YER098W	ATP1	P07251	545 aa	Known RBP	4.86	□□□□□ -1.63
UBP9	YER098W	ELO2	P25358	347 aa		4.86	□□□□□ -1.63
UBP9	YER098W	GID7	P25569	745 aa		4.86	□□□□□ -1.63
UBP9	YER098W	TMT1	P32643	299 aa		4.86	□□□□□ -1.63
UBP9	YER098W	PCL5	P38794	229 aa		4.86	□□□□□ -1.63
UBP9	YER098W	OSW5	P40219	148 aa		4.86	□□□□□ -1.63
UBP9	YER098W	ECM27	P47144	725 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms