RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W STB1P42845 420 aa12.86□□□□□ -0.35
DEP1YAL013W IDS2P46958 469 aa12.86□□□□□ -0.35
DEP1YAL013W RPL17BP46990 184 aaKnown RBP12.86□□□□□ -0.35
DEP1YAL013W SSY5P47002 699 aa12.86□□□□□ -0.35
DEP1YAL013W SNZ1Q03148 297 aa12.86□□□□□ -0.35
DEP1YAL013W PRP3Q03338 469 aaPredicted RBP12.86□□□□□ -0.35
DEP1YAL013W YMR087WQ04299 284 aa12.86□□□□□ -0.35
DEP1YAL013W PAL1Q05518 499 aaKnown RBP12.86□□□□□ -0.35
DEP1YAL013W SNT309Q06091 175 aaPredicted RBP12.86□□□□□ -0.35
DEP1YAL013W MCM21Q06675 368 aa12.86□□□□□ -0.35
DEP1YAL013W YLR040CQ07988 224 aa12.86□□□□□ -0.35
DEP1YAL013W BDS1Q08347 646 aa12.86□□□□□ -0.35
DEP1YAL013W YOR289WQ12012 251 aaPredicted RBP12.86□□□□□ -0.35
DEP1YAL013W RPL40AP0CH08 128 aaKnown RBP12.85□□□□□ -0.35
DEP1YAL013W RPL40BP0CH09 128 aaKnown RBP12.85□□□□□ -0.35
DEP1YAL013W STE4P18851 423 aa12.85□□□□□ -0.35
DEP1YAL013W WBP1P33767 430 aaKnown RBP12.85□□□□□ -0.35
DEP1YAL013W MDM31P38880 579 aa12.85□□□□□ -0.35
DEP1YAL013W CHL4P38907 458 aa12.85□□□□□ -0.35
DEP1YAL013W YIL166CP40445 542 aa12.85□□□□□ -0.35
DEP1YAL013W SHR5P41912 237 aa12.85□□□□□ -0.35
DEP1YAL013W YJR115WP47152 169 aa12.85□□□□□ -0.35
DEP1YAL013W LSG1P53145 640 aaKnown RBP12.85□□□□□ -0.35
DEP1YAL013W YGR054WP53235 642 aaKnown RBP12.85□□□□□ -0.35
DEP1YAL013W VID22Q05934 901 aa12.85□□□□□ -0.35
DEP1YAL013W YPQ2Q06328 317 aa12.85□□□□□ -0.35
DEP1YAL013W YDL007C-AQ2V2Q0 85 aa12.85□□□□□ -0.35
DEP1YAL013W GLT1Q12680 2145 aaKnown RBP12.85□□□□□ -0.35
DEP1YAL013W MET2P08465 486 aa12.84□□□□□ -0.35
DEP1YAL013W SNC1P31109 117 aa12.84□□□□□ -0.35
DEP1YAL013W YBR139WP38109 508 aa12.84□□□□□ -0.35
DEP1YAL013W RPP1P38786 293 aa12.84□□□□□ -0.35
DEP1YAL013W AIM10P39965 576 aaKnown RBP12.84□□□□□ -0.35
DEP1YAL013W BUD17P53727 317 aa12.84□□□□□ -0.35
DEP1YAL013W RHO5P53879 331 aaKnown RBP12.84□□□□□ -0.35
DEP1YAL013W AVO1Q08236 1176 aa12.84□□□□□ -0.35
DEP1YAL013W RBD2Q12270 262 aa12.84□□□□□ -0.35
DEP1YAL013W YGR161W-CQ3E744 92 aa12.84□□□□□ -0.35
DEP1YAL013W TAD3Q9URQ3 322 aa12.84□□□□□ -0.35
DEP1YAL013W RIP1P08067 215 aa12.83□□□□□ -0.36
DEP1YAL013W HAP4P14064 554 aa12.83□□□□□ -0.36
DEP1YAL013W SUR1P33300 382 aa12.83□□□□□ -0.36
DEP1YAL013W RPS20P38701 121 aaKnown RBP12.83□□□□□ -0.36
DEP1YAL013W SKN7P38889 622 aa12.83□□□□□ -0.36
DEP1YAL013W BUR6P40096 142 aa12.83□□□□□ -0.36
DEP1YAL013W YTA6P40328 754 aa12.83□□□□□ -0.36
DEP1YAL013W MRX10Q05648 414 aa12.83□□□□□ -0.36
DEP1YAL013W YOR389WQ08912 624 aa12.83□□□□□ -0.36
DEP1YAL013W YOS9Q99220 542 aa12.83□□□□□ -0.36
DEP1YAL013W ADE5,7P07244 802 aaKnown RBP12.82□□□□□ -0.36
DEP1YAL013W MDL1P33310 695 aa12.82□□□□□ -0.36
DEP1YAL013W FMP23P38231 175 aa12.82□□□□□ -0.36
DEP1YAL013W LEU5P38702 357 aa12.82□□□□□ -0.36
DEP1YAL013W HRB1P38922 454 aaKnown RBP RIP-Chip data12.82□□□□□ -0.36not detected
DEP1YAL013W GDI1P39958 451 aaKnown RBP12.82□□□□□ -0.36
DEP1YAL013W YNL208WP40159 199 aaKnown RBP12.82□□□□□ -0.36
DEP1YAL013W LEM3P42838 414 aa12.82□□□□□ -0.36
DEP1YAL013W BUD9P53226 547 aa12.82□□□□□ -0.36
DEP1YAL013W PEX25Q02969 394 aa12.82□□□□□ -0.36
DEP1YAL013W SEI1Q06058 285 aa12.82□□□□□ -0.36
DEP1YAL013W YDL114WQ07530 308 aa12.82□□□□□ -0.36
DEP1YAL013W MCP1Q12106 302 aa12.82□□□□□ -0.36
DEP1YAL013W YDL177CQ12257 170 aa12.82□□□□□ -0.36
DEP1YAL013W IRA1P18963 3092 aa12.81□□□□□ -0.36
DEP1YAL013W YPK2P18961 677 aa12.81□□□□□ -0.36
DEP1YAL013W PHO80P20052 293 aa12.81□□□□□ -0.36
DEP1YAL013W HXT9P40885 567 aa12.81□□□□□ -0.36
DEP1YAL013W CUP9P41817 306 aa12.81□□□□□ -0.36
DEP1YAL013W MDE1P47095 244 aa12.81□□□□□ -0.36
DEP1YAL013W SHE4P51534 789 aa12.81□□□□□ -0.36
DEP1YAL013W COS10P52924 374 aa12.81□□□□□ -0.36
DEP1YAL013W HXT11P54862 567 aa12.81□□□□□ -0.36
DEP1YAL013W DML1Q03652 475 aa12.81□□□□□ -0.36
DEP1YAL013W GRX3Q03835 250 aa12.81□□□□□ -0.36
DEP1YAL013W FIN1Q03898 291 aa12.81□□□□□ -0.36
DEP1YAL013W SPC19Q03954 165 aa12.81□□□□□ -0.36
DEP1YAL013W YPS7Q06325 596 aa12.81□□□□□ -0.36
DEP1YAL013W HSP42Q12329 375 aa12.81□□□□□ -0.36
DEP1YAL013W FRE7Q12333 620 aa12.81□□□□□ -0.36
DEP1YAL013W PRP46Q12417 451 aaPredicted RBP12.81□□□□□ -0.36
DEP1YAL013W ARF1P11076 181 aaKnown RBP12.8□□□□□ -0.36
DEP1YAL013W HSP150P32478 413 aa12.8□□□□□ -0.36
DEP1YAL013W JEN1P36035 616 aa12.8□□□□□ -0.36
DEP1YAL013W YHR035WP38769 630 aa12.8□□□□□ -0.36
DEP1YAL013W PCL6P40038 420 aa12.8□□□□□ -0.36
DEP1YAL013W YJR098CP47139 656 aa12.8□□□□□ -0.36
DEP1YAL013W PMT3P47190 753 aa12.8□□□□□ -0.36
DEP1YAL013W VPS73P53142 486 aaKnown RBP12.8□□□□□ -0.36
DEP1YAL013W YNR062CP53748 327 aa12.8□□□□□ -0.36
DEP1YAL013W PGA1P53896 198 aa12.8□□□□□ -0.36
DEP1YAL013W MLC2Q06580 163 aa12.8□□□□□ -0.36
DEP1YAL013W THP3Q12049 470 aaKnown RBP12.8□□□□□ -0.36
DEP1YAL013W PCL9Q12477 304 aa12.8□□□□□ -0.36
DEP1YAL013W HAA1Q12753 694 aaKnown RBP12.8□□□□□ -0.36
DEP1YAL013W REP1P03871 373 aa12.79□□□□□ -0.36
DEP1YAL013W CYT1P07143 309 aa12.79□□□□□ -0.36
DEP1YAL013W YEF1P32622 495 aa12.79□□□□□ -0.36
DEP1YAL013W YFR054CP43622 192 aa12.79□□□□□ -0.36
DEP1YAL013W OCA1P50946 238 aaPredicted RBP12.79□□□□□ -0.36
DEP1YAL013W SCW11P53189 542 aa12.79□□□□□ -0.36
Retrieved 100 of 5,963 RNA–protein pairs in 51.8 ms