RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 ZHX3Q9H4I2 956 aa16.06■□□□□ 0.16
CDH1-213ENST00000612417 METTL14Q9HCE5 456 aaKnown RBP16.06■□□□□ 0.16
CDH1-213ENST00000612417 TYW1Q9NV66 732 aaKnown RBP16.06■□□□□ 0.16
CDH1-213ENST00000612417 LOXHD1Q8IVV2 1947 aa16.06■□□□□ 0.16
CDH1-213ENST00000612417 IQCA1LA6NCM1 817 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 UCHL3P15374 230 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 PRKCIP41743 596 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 KIAA0753Q2KHM9 967 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 CATSPERGQ6ZRH7 1159 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 SND1Q7KZF4 910 aaKnown RBP eCLIP16.05■□□□□ 0.168e-7■■■■□ 21
CDH1-213ENST00000612417 INPP4AQ96PE3 977 aaPredicted RBP16.05■□□□□ 0.16
CDH1-213ENST00000612417 SH3GL2Q99962 352 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 TAF1DQ9H5J8 278 aaPredicted RBP16.05■□□□□ 0.16
CDH1-213ENST00000612417 OLFML3Q9NRN5 406 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 SMARCAL1Q9NZC9 954 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 EHD2Q9NZN4 543 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 ADAMTS1Q9UHI8 967 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 CLEC11AQ9Y240 323 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 OTOFQ9HC10 1997 aa16.05■□□□□ 0.16
CDH1-213ENST00000612417 EYA4O95677 639 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 XRCC5P13010 732 aaKnown RBP16.04■□□□□ 0.16
CDH1-213ENST00000612417 NSMFQ6X4W1 530 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 MOB2Q70IA6 237 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 PLCD3Q8N3E9 789 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 ZBTB9Q96C00 473 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 HOXC10Q9NYD6 342 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 ASTN1O14525 1302 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 RLFQ13129 1914 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 GTPBP10A4D1E9 387 aaKnown RBP16.04■□□□□ 0.16
CDH1-213ENST00000612417 MEIS1O00470 390 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 SHOX2O60902 331 aaPredicted RBP16.04■□□□□ 0.16
CDH1-213ENST00000612417 MYBP10242 640 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 RPL13P26373 211 aaKnown RBP16.04■□□□□ 0.16
CDH1-213ENST00000612417 PON1P27169 355 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 MATR3P43243 847 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDH1-213ENST00000612417 SLC7A5Q01650 507 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 PTK2Q05397 1052 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 PLS1Q14651 629 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 EXOC3L4Q17RC7 722 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 CEP55Q53EZ4 464 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 ALS2CLQ60I27 953 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 SNRNP48Q6IEG0 339 aaKnown RBP16.04■□□□□ 0.16
CDH1-213ENST00000612417 RIN2Q8WYP3 895 aaPredicted RBP16.04■□□□□ 0.16
CDH1-213ENST00000612417 OTUD5Q96G74 571 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 MS4A14Q96JA4 679 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDH1-213ENST00000612417 GDF3Q9NR23 364 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 RNF146Q9NTX7 359 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 COL20A1Q9P218 1284 aa16.04■□□□□ 0.16
CDH1-213ENST00000612417 SCN4AP35499 1836 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 IGLV3-22A0A075B6J6 115 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 AKAP3O75969 853 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 NR3C1P04150 777 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 GAP43P17677 238 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 RPS6P62753 249 aaKnown RBP16.03■□□□□ 0.16
CDH1-213ENST00000612417 EPHA7Q15375 998 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 NFIL3Q16649 462 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 GADL1Q6ZQY3 521 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 RNF207Q6ZRF8 634 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 ANKRD13AQ8IZ07 590 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 SYTL5Q8TDW5 730 aaPredicted RBP16.03■□□□□ 0.16
CDH1-213ENST00000612417 CLMNQ96JQ2 1002 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 EIF2AK1Q9BQI3 630 aaKnown RBP16.03■□□□□ 0.16
CDH1-213ENST00000612417 PACSIN1Q9BY11 444 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 NENFQ9UMX5 172 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 RABGAP1Q9Y3P9 1069 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 WDR90Q96KV7 1748 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 PTPRFP10586 1907 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 EIF3DO15371 548 aaKnown RBP eCLIP16.03■□□□□ 0.16
CDH1-213ENST00000612417 EPB41P11171 864 aaKnown RBP16.03■□□□□ 0.16
CDH1-213ENST00000612417 SLC9A1P19634 815 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 ARID5AQ03989 594 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 SH3D19Q5HYK7 790 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 LRRC31Q6UY01 552 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 ZNF571Q7Z3V5 609 aaPredicted RBP16.03■□□□□ 0.16
CDH1-213ENST00000612417 IFT20Q8IY31 132 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 SPAG5Q96R06 1193 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 RUSC1Q9BVN2 902 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 BHMT2Q9H2M3 363 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 RIPK3Q9Y572 518 aa16.03■□□□□ 0.16
CDH1-213ENST00000612417 MYH11P35749 1972 aa16.02■□□□□ 0.16
CDH1-213ENST00000612417 GOLGA8KD6RF30 607 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 TBCAO75347 108 aaKnown RBP16.02■□□□□ 0.15
CDH1-213ENST00000612417 FTCDO95954 541 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 ACTN1P12814 892 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 JAM2P57087 298 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 TREML2Q5T2D2 321 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 LRCH2Q5VUJ6 765 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 PNMA8AQ86V59 439 aaPredicted RBP16.02■□□□□ 0.15
CDH1-213ENST00000612417 FAM76AQ8TAV0 307 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 SLC35C1Q96A29 364 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 TUFT1Q9NNX1 390 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 MAP3K20Q9NYL2 800 aaKnown RBP16.02■□□□□ 0.15
CDH1-213ENST00000612417 TMEM59LQ9UK28 342 aa16.02■□□□□ 0.15
CDH1-213ENST00000612417 GOLGA6CA6NDK9 693 aa16.01■□□□□ 0.15
CDH1-213ENST00000612417 RSPH10B2B2RC85 870 aa16.01■□□□□ 0.15
CDH1-213ENST00000612417 IRF6O14896 467 aa16.01■□□□□ 0.15
CDH1-213ENST00000612417 OPA1O60313 960 aa16.01■□□□□ 0.15
CDH1-213ENST00000612417 RSPH10BP0C881 870 aa16.01■□□□□ 0.15
CDH1-213ENST00000612417 GOLGA6DP0CG33 693 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms