RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 OTUD6AQ7L8S5 288 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 KCNK18Q7Z418 384 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 MYOCDQ8IZQ8 938 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 USP38Q8NB14 1042 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 PRPF31Q8WWY3 499 aaKnown RBP12.45□□□□□ -0.42
VRK3-210ENST00000596121 CDX2Q99626 313 aaPredicted RBP12.45□□□□□ -0.42
VRK3-210ENST00000596121 FDXACB1Q9BRP7 624 aaPredicted RBP12.45□□□□□ -0.42
VRK3-210ENST00000596121 CLIC4Q9Y696 253 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 EPOPA6NHQ4 379 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 LAD1O00515 517 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 TLL1O43897 1013 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 UPP2O95045 317 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 XRCC6P12956 609 aaKnown RBP eCLIP12.44□□□□□ -0.42
VRK3-210ENST00000596121 EIF4BP23588 611 aaKnown RBP12.44□□□□□ -0.42
VRK3-210ENST00000596121 CCT6AP40227 531 aaKnown RBP12.44□□□□□ -0.42
VRK3-210ENST00000596121 RFC5P40937 340 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 POLGP54098 1239 aaPredicted RBP12.44□□□□□ -0.42
VRK3-210ENST00000596121 PKP1Q13835 747 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 DSC3Q14574 896 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 PTPAQ15257 358 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 SF3A1Q15459 793 aaKnown RBP12.44□□□□□ -0.42
VRK3-210ENST00000596121 RHPN2Q8IUC4 686 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 ASAP3Q8TDY4 903 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 PNMA5Q96PV4 448 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 NACC1Q96RE7 527 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 TSPYL2Q9H2G4 693 aaPredicted RBP12.44□□□□□ -0.42
VRK3-210ENST00000596121 MINDY3Q9H8M7 445 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 IFT122Q9HBG6 1241 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 PPME1Q9Y570 386 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 MYO9BQ13459 2157 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 TTC3P53804 2025 aa12.44□□□□□ -0.42
VRK3-210ENST00000596121 COL4A6Q14031 1691 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 TMEM265A0A087WTH1 108 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 VWA3AA6NCI4 1184 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 RFXAPO00287 272 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 ARL2P36404 184 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 DNM2P50570 870 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 LAMTOR4Q0VGL1 99 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 ERMNQ8TAM6 284 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 SP7Q8TDD2 431 aaPredicted RBP12.43□□□□□ -0.42
VRK3-210ENST00000596121 SNX29Q8TEQ0 813 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 LRRC15Q8TF66 581 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 NLRP7Q8WX94 980 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 SLC7A3Q8WY07 619 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 MYLIPQ8WY64 445 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 RAD9AQ99638 391 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 ADAM2Q99965 735 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 ZBED2Q9BTP6 218 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 CERS4Q9HA82 394 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 SLC28A3Q9HAS3 691 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 POLD4Q9HCU8 107 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 GPRC5CQ9NQ84 441 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 DBR1Q9UK59 544 aaKnown RBP12.43□□□□□ -0.42
VRK3-210ENST00000596121 KIAA1024Q9UPX6 916 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 COL4A3BPQ9Y5P4 624 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 COL6A3P12111 3177 aa12.43□□□□□ -0.42
VRK3-210ENST00000596121 ARID2Q68CP9 1835 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 LINC01553A4QN01 128 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 E9PMD0 336 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 GPR182O15218 404 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 USO1O60763 962 aaKnown RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 SRGAP2CP0DJJ0 459 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 GATMP50440 423 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 FAM189BP81408 668 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 CEBPZQ03701 1054 aaKnown RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 GRB10Q13322 594 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 ADGRE1Q14246 886 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 FOXD4L5Q5VV16 416 aaPredicted RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 PPP2R2DQ66LE6 453 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 ARL6IP4Q66PJ3 421 aaKnown RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 MAEAQ7L5Y9 396 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 FOXD4L4Q8WXT5 416 aaPredicted RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 NLRP4Q96MN2 994 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 USP28Q96RU2 1077 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 PLIN2Q99541 437 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 MTRQ99707 1265 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 JPH2Q9BR39 696 aaPredicted RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 PRDM12Q9H4Q4 367 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 RC3H2Q9HBD1 1191 aaKnown RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 RGS18Q9NS28 235 aa12.42□□□□□ -0.42
VRK3-210ENST00000596121 DDX19AQ9NUU7 478 aaKnown RBP12.42□□□□□ -0.42
VRK3-210ENST00000596121 C9IYK1 514 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 DGAT1O75907 488 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 LINC00271P0C7V0 271 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 MUTP22033 750 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 GLRA2P23416 452 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 MARCKSP29966 332 aaPredicted RBP12.41□□□□□ -0.42
VRK3-210ENST00000596121 CAPSQ13938 189 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 KRT79Q5XKE5 535 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 PADI6Q6TGC4 694 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 USP49Q70CQ1 688 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 ZNF410Q86VK4 478 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 ZNF710Q8N1W2 664 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 PSPC1Q8WXF1 523 aaKnown RBP12.41□□□□□ -0.42
VRK3-210ENST00000596121 BSNDQ8WZ55 320 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 ZNF689Q96CS4 500 aaPredicted RBP12.41□□□□□ -0.42
VRK3-210ENST00000596121 SCLT1Q96NL6 688 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 FTHL17Q9BXU8 183 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 GCOM2Q9BZD3 368 aaPredicted RBP12.41□□□□□ -0.42
VRK3-210ENST00000596121 BHMT2Q9H2M3 363 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms