RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SLC37A4O43826 429 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 GPC3P51654 580 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 NPEPPSP55786 919 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 THEM5Q8N1Q8 247 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 CEP63Q96MT8 703 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 TRIM9Q9C026 710 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 AGO2Q9UKV8 859 aaKnown RBP10.67□□□□□ -0.7
LIG3-216ENST00000593099 C4BP0C0L5 1744 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 RGPD1P0DJD0 1748 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 ACTN1P12814 892 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 TAL1P17542 331 aaPredicted RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 NSFP46459 744 aaKnown RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 BFSP2Q13515 415 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 BTNL9Q6UXG8 535 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 SH3BP5LQ7L8J4 393 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 LRRC71Q8N4P6 559 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 GCNT4Q9P109 453 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 RASAL2Q9UJF2 1139 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 PLA2G6O60733 806 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 HOXC6P09630 235 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 FGRP09769 529 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 RSRC2Q7L4I2 434 aaKnown RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 GPR142Q7Z601 462 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 MTG1Q9BT17 334 aaPredicted RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 PRMT7Q9NVM4 692 aaPredicted RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 HUS1O60921 280 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 PLS3P13797 630 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 CYP2C19P33261 490 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 TMEM62Q0P6H9 643 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 Q4G0T1 1027 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 TREML2Q5T2D2 321 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 SND1Q7KZF4 910 aaKnown RBP eCLIP10.66□□□□□ -0.7
LIG3-216ENST00000593099 NIPA1Q7RTP0 329 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 SLC51AQ86UW1 340 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 UBL4BQ8N7F7 174 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 ACAP3Q96P50 834 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 GMLQ99445 158 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 GOLPH3LQ9H4A5 285 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 AGO4Q9HCK5 861 aaKnown RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 ZDHHC9Q9Y397 364 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 BZW2Q9Y6E2 419 aaKnown RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 H3BRB1 525 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 CYTH3O43739 400 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 CYP11B2P19099 503 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 MUTP22033 750 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 PTGER2P43116 358 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 OR6B3Q8NGW1 331 aa10.66□□□□□ -0.7
LIG3-216ENST00000593099 TUT1Q9H6E5 874 aaKnown RBP10.66□□□□□ -0.7
LIG3-216ENST00000593099 UNCXA6NJT0 531 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 ZBTB24O43167 697 aaPredicted RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 THAP12O43422 761 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 MED7O43513 233 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 NMT1P30419 496 aaKnown RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 ATN1P54259 1190 aaPredicted RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 TMEM132BQ14DG7 1078 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 C11orf57Q6ZUT1 292 aaPredicted RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 APBA2Q99767 749 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 NDST4Q9H3R1 872 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 LRRC4Q9HBW1 653 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 COL22A1Q8NFW1 1626 aaPredicted RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 CD58P19256 250 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 CIITAP33076 1130 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 THPOP40225 353 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 NLRP11P59045 1033 aaKnown RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 KCNB1Q14721 858 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 TLK2Q86UE8 772 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 CATSPER3Q86XQ3 398 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 REEP2Q9BRK0 252 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 UBE2TQ9NPD8 197 aaPredicted RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 CYP39A1Q9NYL5 469 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 TUBE1Q9UJT0 475 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 AFDNP55196 1824 aaKnown RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 CTAGE15A4D2H0 777 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 TBC1D8O95759 1140 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 CTAGE8P0CG41 777 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 ANXA13P27216 316 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 NOL9Q5SY16 702 aaKnown RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 CCDC91Q7Z6B0 441 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 CTAGE6Q86UF2 777 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 CTAGE4Q8IX94 777 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 GPD1LQ8N335 351 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 IFIH1Q9BYX4 1025 aaKnown RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 CYP26B1Q9NR63 512 aa10.65□□□□□ -0.7
LIG3-216ENST00000593099 SAMSN1Q9NSI8 373 aaKnown RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 RBAKQ9NYW8 714 aaPredicted RBP10.65□□□□□ -0.7
LIG3-216ENST00000593099 PPFIA4O75335 1185 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 H2AFZP0C0S5 128 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 ABCB4P21439 1286 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 PRCPP42785 496 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 ADKP55263 362 aaKnown RBP10.64□□□□□ -0.71
LIG3-216ENST00000593099 EVX2Q03828 476 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 PPP1R2P3Q6NXS1 205 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 SCARA5Q6ZMJ2 495 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 H2AFVQ71UI9 128 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 PDCL2Q8N4E4 241 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 FAM149B1Q96BN6 582 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 NAP1L3Q99457 506 aaPredicted RBP10.64□□□□□ -0.71
LIG3-216ENST00000593099 AFG3L2Q9Y4W6 797 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 SNCAIPQ9Y6H5 919 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms