RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 RABGGTBP53611 331 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 RCAN1P53805 252 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 GJA9P57773 515 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 KLRC3Q07444 240 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 PPP2R5BQ15173 497 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 RAB30Q15771 203 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 TTC39BQ5VTQ0 682 aaPredicted RBP11.72□□□□□ -0.53
SS18-221ENST00000582448 SHISA2Q6UWI4 295 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 MAMDC4Q6UXC1 1216 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 FAM126BQ8IXS8 530 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 PRPF38AQ8NAV1 312 aaKnown RBP11.72□□□□□ -0.53
SS18-221ENST00000582448 IGDCC4Q8TDY8 1250 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 MTIF3Q9H2K0 278 aaKnown RBP11.72□□□□□ -0.53
SS18-221ENST00000582448 ABHD16BQ9H3Z7 469 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 IL23AQ9NPF7 189 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 HOMER2Q9NSB8 354 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 BRPF3Q9ULD4 1205 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 ZDHHC9Q9Y397 364 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 DNAJC25-GNG10A0A024R161 153 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.71□□□□□ -0.53
SS18-221ENST00000582448 TSPY2A6NKD2 308 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 F13A1P00488 732 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 FGRP09769 529 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 FURINP09958 794 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 CALM1P0DP23 149 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 CALM2P0DP24 149 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 CALM3P0DP25 149 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 GATA4P43694 442 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 RAC1P63000 192 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 ST3GAL1Q11201 340 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 ZNF211Q13398 564 aaPredicted RBP11.71□□□□□ -0.53
SS18-221ENST00000582448 APOA5Q6Q788 366 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 CXCL17Q6UXB2 119 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 ARMCX2Q7L311 632 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 CATIPQ7Z7H3 387 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 WFDC8Q8IUA0 241 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 ZNF444Q8N0Y2 327 aaPredicted RBP11.71□□□□□ -0.53
SS18-221ENST00000582448 SMARCC2Q8TAQ2 1214 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 HERVK_113Q902F9 699 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 WASF1Q92558 559 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 NECAB3Q96P71 396 aaPredicted RBP11.71□□□□□ -0.53
SS18-221ENST00000582448 HIPK3Q9H422 1215 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 LY9Q9HBG7 655 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 CNTN3Q9P232 1028 aa11.71□□□□□ -0.53
SS18-221ENST00000582448 YBX2Q9Y2T7 364 aaKnown RBP11.71□□□□□ -0.53
SS18-221ENST00000582448 LAMA4Q16363 1823 aa11.71□□□□□ -0.54
SS18-221ENST00000582448 A0A0G2JMZ2 1700 aa11.71□□□□□ -0.54
SS18-221ENST00000582448 ROBO3Q96MS0 1386 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 TNKSO95271 1327 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 UMODL1Q5DID0 1318 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 DYNC1LI2O43237 492 aaPredicted RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 JAK2O60674 1132 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 ABL1P00519 1130 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 MYOGP15173 224 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 PTGS1P23219 599 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 CST5P28325 142 aaPredicted RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 MZF1P28698 734 aaPredicted RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 CNTN2Q02246 1040 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 TNFAIP2Q03169 654 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 DOC2BQ14184 412 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 IFIT1BQ5T764 474 aaKnown RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 RASIP1Q5U651 963 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 PDE12Q6L8Q7 609 aaKnown RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 MICU3Q86XE3 530 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 CCDC144CPQ8IYA2 1237 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 RETREG2Q8NC44 543 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 NSUN7Q8NE18 718 aaKnown RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 FAM122AQ96E09 287 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 ZSCAN16Q9H4T2 348 aaPredicted RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 NCOA5Q9HCD5 579 aaKnown RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 INCENPQ9NQS7 918 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 TRIM33Q9UPN9 1127 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 MTMR6Q9Y217 621 aa11.7□□□□□ -0.54
SS18-221ENST00000582448 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.7□□□□□ -0.54
SS18-221ENST00000582448 COL11A1P12107 1806 aaPredicted RBP11.7□□□□□ -0.54
SS18-221ENST00000582448 MYO9BQ13459 2157 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 PRDM1O75626 825 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 CD4P01730 458 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 TSPY3P0CV98 308 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 TSPY8P0CW00 308 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 ATP11AP98196 1134 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 TFF2Q03403 129 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 HYAL2Q12891 473 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 IKQ13123 557 aaPredicted RBP11.69□□□□□ -0.54
SS18-221ENST00000582448 ITGA7Q13683 1181 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 TRIM29Q14134 588 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 GDF6Q6KF10 455 aaPredicted RBP11.69□□□□□ -0.54
SS18-221ENST00000582448 EEPD1Q7L9B9 569 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 ZNF438Q7Z4V0 828 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 RGS22Q8NE09 1264 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 ZKSCAN3Q9BRR0 538 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 AP5M1Q9H0R1 490 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 TRPV6Q9H1D0 765 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 UPF3AQ9H1J1 476 aaKnown RBP11.69□□□□□ -0.54
SS18-221ENST00000582448 NYAP2Q9P242 653 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 FEM1BQ9UK73 627 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 POLIQ9UNA4 740 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 PLXNA1Q9UIW2 1896 aa11.69□□□□□ -0.54
SS18-221ENST00000582448 RFXAPO00287 272 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 ADAM23O75077 832 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms