RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 CTNND1O60716 968 aaKnown RBP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 SHMT1P34896 483 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 DRAP1Q14919 205 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 DPY19L2P1Q6NXN4 242 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 TATDN2Q93075 761 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 ERP44Q9BS26 406 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 TLDC2A0PJX2 215 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 EIF3DO15371 548 aaKnown RBP eCLIP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 ETNPPLQ8TBG4 499 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 CENPTQ96BT3 561 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 NSRP1Q9H0G5 558 aaKnown RBP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 NHSQ6T4R5 1651 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 MYH7BA7E2Y1 1941 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 RGS16O15492 202 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 PMS2P54278 862 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 ANKRD20A8PQ5CZ79 823 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 PRR5LQ6MZQ0 368 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 POLR3CQ9BUI4 534 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 OLFML3Q9NRN5 406 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 CNOT8Q9UFF9 292 aaKnown RBP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 TNRC6CQ9HCJ0 1690 aaKnown RBP11.66□□□□□ -0.54
CCDC40-207ENST00000572253 RSPH10B2B2RC85 870 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 G3V3G9 751 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 RSPH10BP0C881 870 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 SPATA31C1P0DKV0 1188 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 PLTPP55058 493 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 DCAF8Q5TAQ9 597 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 MSL1Q68DK7 614 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 FBXO11Q86XK2 927 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 RHOT2Q8IXI1 618 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 LNX1Q8TBB1 728 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-207ENST00000572253 C10orf71Q711Q0 1435 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 MIF4GDA9UHW6 222 aaKnown RBP11.65□□□□□ -0.54
CCDC40-207ENST00000572253 RASSF9O75901 435 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 ZBTB48P10074 688 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-207ENST00000572253 FMO5P49326 533 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 KIAA1755Q5JYT7 1200 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 ADAT2Q7Z6V5 191 aaKnown RBP11.65□□□□□ -0.54
CCDC40-207ENST00000572253 PARP9Q8IXQ6 854 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 HVCN1Q96D96 273 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 SGSM3Q96HU1 749 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 RUSC1Q9BVN2 902 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 OSGEPQ9NPF4 335 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 DDX4Q9NQI0 724 aaKnown RBP11.65□□□□□ -0.54
CCDC40-207ENST00000572253 SAMD15Q9P1V8 674 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 SYNGAP1Q96PV0 1343 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 ATAD5Q96QE3 1844 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 STRCQ7RTU9 1775 aa11.65□□□□□ -0.54
CCDC40-207ENST00000572253 ANKRD62A6NC57 917 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 PHF20L1A8MW92 1017 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 GHRP10912 638 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 EZRP15311 586 aaKnown RBP11.65□□□□□ -0.55
CCDC40-207ENST00000572253 NF2P35240 595 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 HOXD13P35453 343 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 MYL7Q01449 175 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 SPIRE1Q08AE8 756 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 CETN1Q12798 172 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 NEDD9Q14511 834 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 QPCTQ16769 361 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 TLCD1Q96CP7 247 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 FAM129AQ9BZQ8 928 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 INTS2Q9H0H0 1204 aaKnown RBP11.65□□□□□ -0.55
CCDC40-207ENST00000572253 PABPC3Q9H361 631 aaKnown RBP11.65□□□□□ -0.55
CCDC40-207ENST00000572253 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.65□□□□□ -0.55
CCDC40-207ENST00000572253 AJAP1Q9UKB5 411 aaPredicted RBP11.65□□□□□ -0.55
CCDC40-207ENST00000572253 PPP1R9AQ9ULJ8 1098 aa11.65□□□□□ -0.55
CCDC40-207ENST00000572253 ADCY2Q08462 1091 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 PLS1Q14651 629 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 C6orf118Q5T5N4 469 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SEL1L2Q5TEA6 688 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 DUPD1Q68J44 220 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CYB5D1Q6P9G0 228 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 JAMLQ86YT9 394 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SLC30A5Q8TAD4 765 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 VTI1AQ96AJ9 217 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 EIF2AK1Q9BQI3 630 aaKnown RBP11.64□□□□□ -0.55
CCDC40-207ENST00000572253 COA1Q9GZY4 146 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 KDM4CQ9H3R0 1056 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CTTNBP2NLQ9P2B4 639 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 POLLQ9UGP5 575 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 PNMA2Q9UL42 364 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SNX24Q9Y343 169 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 BACH1O14867 736 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 RIMBP2O15034 1052 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 DDX3YO15523 660 aaKnown RBP11.64□□□□□ -0.55
CCDC40-207ENST00000572253 MMEP08473 750 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 NUDT17P0C025 328 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 BCRP11274 1271 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 DRD4P21917 467 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 RFX1P22670 979 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CHRNA3P32297 505 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SCTRP47872 440 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 GSCP56915 257 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-207ENST00000572253 ARHGAP44Q17R89 818 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 LACTB2Q53H82 288 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-207ENST00000572253 PARVGQ9HBI0 331 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CD248Q9HCU0 757 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SEL1LQ9UBV2 794 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SBF2Q86WG5 1849 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CDK5RAP2Q96SN8 1893 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms