RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 TPH2Q8IWU9 490 aa15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 SLFN12Q8IYM2 578 aa15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 ZNF579Q8NAF0 562 aaKnown RBP15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 CEP170P1Q96L14 293 aa15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 NIFKQ9BYG3 293 aaKnown RBP15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 ADAMTS10Q9H324 1103 aa15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 SUCLA2Q9P2R7 463 aaPredicted RBP15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 MRPL42Q9Y6G3 142 aaKnown RBP15.27■□□□□ 0.04
VPS9D1-204ENST00000565023 ATG2AQ2TAZ0 1938 aa15.27■□□□□ 0.03
VPS9D1-204ENST00000565023 MYO7AQ13402 2215 aa15.27■□□□□ 0.03
VPS9D1-204ENST00000565023 COL4A6Q14031 1691 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 ZBTB39O15060 712 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 DKC1O60832 514 aaKnown RBP eCLIP15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 DNM2P50570 870 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 MRPS5P82675 430 aaKnown RBP15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 SPOUT1Q5T280 376 aaKnown RBP15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 KSR1Q8IVT5 923 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 RNF169Q8NCN4 708 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 ZNF689Q96CS4 500 aaPredicted RBP15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 NLRP4Q96MN2 994 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 TTC12Q9H892 705 aaPredicted RBP15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 RC3H2Q9HBD1 1191 aaKnown RBP15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 CYP26B1Q9NR63 512 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 RGS18Q9NS28 235 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 PCDHA12Q9UN75 941 aa15.26■□□□□ 0.03
VPS9D1-204ENST00000565023 PIEZO1Q92508 2521 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 A0A087WWV3 80 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 A0A087WZ62 844 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 TBKBP1A7MCY6 615 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 H3BNC9 293 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 FGFR1P11362 822 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 DARSP14868 501 aaKnown RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 ZSCAN20P17040 1043 aaPredicted RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 EIF4BP23588 611 aaKnown RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 BMPR1AP36894 532 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 POLGP54098 1239 aaPredicted RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 SPIRE1Q08AE8 756 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 ZNF174Q15697 407 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 PTPROQ16827 1216 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 XKR9Q5GH70 373 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 FAM102BQ5T8I3 360 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 EP400NLQ6ZTU2 488 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 SLC24A5Q71RS6 500 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 ATXN2LQ8WWM7 1075 aaKnown RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 SYMPKQ92797 1274 aaKnown RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 ASB2Q96Q27 587 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 CEP89Q96ST8 783 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 EIF2AK1Q9BQI3 630 aaKnown RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 FDXACB1Q9BRP7 624 aaPredicted RBP15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 TMEM60Q9H2L4 133 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 C1orf112Q9NSG2 853 aa15.25■□□□□ 0.03
VPS9D1-204ENST00000565023 POTEMA6NI47 508 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 C9IYK1 514 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 GRM6O15303 877 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 MAFO75444 373 aaPredicted RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 HOXD11P31277 338 aaPredicted RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 YWHABP31946 246 aaKnown RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 KCNQ1P51787 676 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 CMTR2Q8IYT2 770 aaKnown RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 TMEM143Q96AN5 459 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 MRPL38Q96DV4 380 aaKnown RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 CCDC43Q96MW1 224 aaKnown RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 GCOM2Q9BZD3 368 aaPredicted RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 ZSWIM4Q9H7M6 989 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 ATP6V0A4Q9HBG4 840 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 ALG13Q9NP73 1137 aaKnown RBP15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 LMCD1Q9NZU5 365 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 HCSTQ9UBK5 93 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 RWDD3Q9Y3V2 267 aa15.24■□□□□ 0.03
VPS9D1-204ENST00000565023 PLXNA4Q9HCM2 1894 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 IGKV6-21A0A0C4DH24 114 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 LINC00271P0C7V0 271 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 CUL4AQ13619 759 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 DSC3Q14574 896 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 NBR1Q14596 966 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 LONRF3Q496Y0 759 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 OTUD6AQ7L8S5 288 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 C4orf19Q8IY42 314 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 FBXO18Q8NFZ0 1043 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 SLC7A3Q8WY07 619 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 HLA-CQ95604 372 aa15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 JPH2Q9BR39 696 aaPredicted RBP15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 C11orf84Q9BUA3 381 aaPredicted RBP15.23■□□□□ 0.03
VPS9D1-204ENST00000565023 SLITRK3O94933 977 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 RB1P06400 928 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 SRGAP2CP0DJJ0 459 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 EMC2Q15006 297 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 TCEAL5Q5H9L2 206 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 TTC38Q5R3I4 469 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 CATSPER4Q7RTX7 472 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 CRIPAKQ8N1N5 446 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 PIGOQ8TEQ8 1089 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 SNX21Q969T3 373 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 NECAB3Q96P71 396 aaPredicted RBP15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 COG5Q9UP83 839 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 COL4A3BPQ9Y5P4 624 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 BRWD1Q9NSI6 2320 aa15.22■□□□□ 0.03
VPS9D1-204ENST00000565023 TNFRSF10AO00220 468 aa15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 SFPQP23246 707 aaKnown RBP eCLIP15.21■□□□□ 0.03
VPS9D1-204ENST00000565023 TECP42680 631 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms