RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RAET1EQ8TD07 263 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 DUSP9Q99956 384 aaKnown RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 C17orf75Q9HAS0 396 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 ZBTB42B2RXF5 422 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 H3BRB1 525 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 EIF3DO15371 548 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP3-218ENST00000560202 SEPT4O43236 478 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 ADCY5O95622 1261 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 CNGA1P29973 690 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 CPT1AP50416 773 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 PEX3P56589 373 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 RTP1P59025 263 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 LRRC63Q05C16 580 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 TBC1D8BQ0IIM8 1120 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 ZC2HC1CQ53FD0 456 aaPredicted RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 BRDTQ58F21 947 aaPredicted RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 HSP90AA4PQ58FG1 418 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 CDKAL1Q5VV42 579 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 FOXR2Q6PJQ5 311 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 EXOC8Q8IYI6 725 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 PXYLP1Q8TE99 480 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 TSG101Q99816 390 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 POLR3FQ9H1D9 316 aaPredicted RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 KCTD10Q9H3F6 313 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 TUT1Q9H6E5 874 aaKnown RBP12.38□□□□□ -0.43
USP3-218ENST00000560202 TSKSQ9UJT2 592 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 PCDHB13Q9Y5F0 798 aa12.38□□□□□ -0.43
USP3-218ENST00000560202 K7ENM7 598 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 HMGCRP04035 888 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 PRKAR2AP13861 404 aaKnown RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 INSRRP14616 1297 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 CDK11BP21127 795 aaKnown RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 HOXD13P35453 343 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 ARL2P36404 184 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 SMTNP53814 917 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 NCKAP1LP55160 1127 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 PRMT2P55345 433 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 IRX5P78411 483 aaPredicted RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 DMP1Q13316 513 aaPredicted RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 KNOP1Q1ED39 458 aaKnown RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 ZCWPW2Q504Y3 356 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 ZNF484Q5JVG2 852 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 CSGALNACT2Q8N6G5 542 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 SLC17A8Q8NDX2 589 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 NOC3LQ8WTT2 800 aaKnown RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 SPIRE2Q8WWL2 714 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 BSNDQ8WZ55 320 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 TMEM143Q96AN5 459 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 NTPCRQ9BSD7 190 aaKnown RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 STRA6Q9BX79 667 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 SRRTQ9BXP5 876 aaKnown RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 TRIM5Q9C035 493 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 ST6GALNAC4Q9H4F1 302 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 RNF216Q9NWF9 866 aaPredicted RBP12.37□□□□□ -0.43
USP3-218ENST00000560202 WDR81Q562E7 1941 aa12.37□□□□□ -0.43
USP3-218ENST00000560202 UBE4BO95155 1302 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 IGKV6-21A0A0C4DH24 114 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 CCDC169A6NNP5 214 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 ZNF500O60304 480 aaPredicted RBP12.36□□□□□ -0.43
USP3-218ENST00000560202 PPP1R37O75864 691 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 F2P00734 622 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 CCND3P30281 292 aaPredicted RBP12.36□□□□□ -0.43
USP3-218ENST00000560202 NPTX2P47972 431 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 GJA9P57773 515 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 FANCCQ00597 558 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 BEX3Q00994 111 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 KCNA1Q09470 495 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 ALCAMQ13740 583 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 FSCN1Q16658 493 aaKnown RBP12.36□□□□□ -0.43
USP3-218ENST00000560202 HAUS6Q7Z4H7 955 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 TRAPPC12Q8WVT3 735 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 IFT74Q96LB3 600 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 JPH2Q9BR39 696 aaPredicted RBP12.36□□□□□ -0.43
USP3-218ENST00000560202 THAP9Q9H5L6 903 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 KMT5AQ9NQR1 393 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 KCNG1Q9UIX4 513 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 PCNTO95613 3336 aa12.36□□□□□ -0.43
USP3-218ENST00000560202 PDXKO00764 312 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 SLC16A4O15374 487 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 GAS2O43903 313 aaKnown RBP12.35□□□□□ -0.43
USP3-218ENST00000560202 SERPINC1P01008 464 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 C6orf222P0C671 652 aaPredicted RBP12.35□□□□□ -0.43
USP3-218ENST00000560202 RARBP10826 455 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 ZNF75DP51815 510 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 IGBP1P78318 339 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 GTF2BQ00403 316 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 MAP3K21Q5TCX8 1036 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 IER5Q5VY09 327 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 IRF2BP1Q8IU81 584 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 KSR1Q8IVT5 923 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 TCP11Q8WWU5 503 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 KAT2BQ92831 832 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 SUGCTQ9HAC7 445 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 TRAF3IP3Q9Y228 551 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 MYH9P35579 1960 aaKnown RBP12.35□□□□□ -0.43
USP3-218ENST00000560202 CASP8AP2Q9UKL3 1982 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 ARID2Q68CP9 1835 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 COL1A2P08123 1366 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 C22orf31O95567 290 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 FGFR1OPO95684 399 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms