RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ADAM2Q99965 735 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 EIF2AK1Q9BQI3 630 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 ZSWIM4Q9H7M6 989 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 RGS18Q9NS28 235 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 PPME1Q9Y570 386 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 XIRP2A4UGR9 3374 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 C9IYK1 514 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 TRAPPC10P48553 1259 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 SARSP49591 514 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 TOB1P50616 345 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 CDC42EP1Q00587 391 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 ORC2Q13416 577 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 EPC2Q52LR7 807 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 ODR4Q5SWX8 454 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 TPH2Q8IWU9 490 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 TMEM192Q8IY95 271 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 GDPD5Q8WTR4 605 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 CEP170P1Q96L14 293 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 SAMD11Q96NU1 681 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 DHX33Q9H6R0 707 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 C1orf112Q9NSG2 853 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 LMCD1Q9NZU5 365 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 SUCLA2Q9P2R7 463 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 SIP14410 1827 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 ADGRA3Q8IWK6 1321 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 GBF1Q92538 1859 aa11.5□□□□□ -0.57
CCDC88C-206ENST00000553437 COL4A6Q14031 1691 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 A0A087WZ62 844 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 GTPBP6O43824 516 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 CSDE1O75534 798 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 OR52Z1P0C646 297 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 STAG3L1P0CL83 205 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 SPATA31C1P0DKV0 1188 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 FGFR4P22455 802 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 RFC5P40937 340 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 GATMP50440 423 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 DNM2P50570 870 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 NBR1Q14596 966 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 TTC38Q5R3I4 469 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 SLC24A5Q71RS6 500 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 OTUD6AQ7L8S5 288 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 KSR1Q8IVT5 923 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 FIBCD1Q8N539 461 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 FBXO22Q8NEZ5 403 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 NEK9Q8TD19 979 aa11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 CLP1Q92989 425 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 JPH2Q9BR39 696 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 FDXACB1Q9BRP7 624 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-206ENST00000553437 MICAL3Q7RTP6 2002 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 KAT6AQ92794 2004 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 DENND3A2RUS2 1198 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 C5orf67F2Z3F1 127 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 H3BNC9 293 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 COL9A1P20849 921 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 GJB2P29033 226 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 BMPR1AP36894 532 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 TECP42680 631 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 CUL4AQ13619 759 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 BTG3Q14201 252 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 XKR9Q5GH70 373 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 ZNF410Q86VK4 478 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 RHPN2Q8IUC4 686 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 EXOC8Q8IYI6 725 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 CMTR2Q8IYT2 770 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 MICALL1Q8N3F8 863 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 PRPF31Q8WWY3 499 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 NLRP7Q8WX94 980 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 SLC7A3Q8WY07 619 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 TMEM143Q96AN5 459 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 GCOM2Q9BZD3 368 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 ELAC1Q9H777 363 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 IFT122Q9HBG6 1241 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 XPNPEP1Q9NQW7 623 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 ANKEF1Q9NU02 776 aa11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 MRPL42Q9Y6G3 142 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-206ENST00000553437 A0A087WWV3 80 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 MED24O75448 989 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 RB1P06400 928 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 XRCC6P12956 609 aaKnown RBP eCLIP11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 RARRES1P49788 294 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 POLGP54098 1239 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 GPM6BQ13491 265 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 GNL2Q13823 731 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 EMC2Q15006 297 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 FAM102BQ5T8I3 360 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 CATSPER3Q86XQ3 398 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 ECHDC2Q86YB7 292 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 PIGOQ8TEQ8 1089 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 SCLT1Q96NL6 688 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 POLR3CQ9BUI4 534 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 TUFT1Q9NNX1 390 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 BMP2KQ9NSY1 1161 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 RNF19AQ9NV58 838 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 TMEM161AQ9NX61 479 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 RAPGEFL1Q9UHV5 662 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 LRFN2Q9ULH4 789 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 NOL7Q9UMY1 257 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 KIF3AQ9Y496 699 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 PCDHB7Q9Y5E2 793 aa11.47□□□□□ -0.57
CCDC88C-206ENST00000553437 PCDHB6Q9Y5E3 794 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms