RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 IRX1P78414 480 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 AMPD2Q01433 879 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 NR5A1Q13285 461 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 NR1I3Q14994 352 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SLC39A14Q15043 492 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 FSCN1Q16658 493 aaKnown RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 C11orf91Q3C1V1 193 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 CXCL17Q6UXB2 119 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 C7orf61Q8IZ16 206 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 RNF217Q8TC41 542 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 ENOX1Q8TC92 643 aaKnown RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 CUL5Q93034 780 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 MPHOSPH6Q99547 160 aaKnown RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 PHF20Q9BVI0 1012 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 TMEM260Q9NX78 707 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 PCDHA5Q9Y5H7 936 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SYN1P17600 705 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 NKX3-2P78367 333 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 RBL2Q08999 1139 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 TTLL4Q14679 1199 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 WLSQ5T9L3 541 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 PPP1R13LQ8WUF5 828 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 TSEN34Q9BSV6 310 aaKnown RBP8.4□□□□□ -1.06
LIMA1-216ENST00000552909 SELENOOQ9BVL4 669 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 AP5M1Q9H0R1 490 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 FOXP1Q9H334 677 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-216ENST00000552909 SPC25Q9HBM1 224 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 RIC8AQ9NPQ8 531 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 KLC4Q9NSK0 619 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 ZMYND8Q9ULU4 1186 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-216ENST00000552909 PCDHA6Q9UN73 950 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 PCDHA8Q9Y5H6 950 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 FRMPD4Q14CM0 1322 aa8.4□□□□□ -1.06
LIMA1-216ENST00000552909 DOCK5Q9H7D0 1870 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 A0A1B0GTH6 734 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 FAM237AA0A1B0GTK4 181 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 PPP6R2O75170 966 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 PAX7P23759 505 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CCND2P30279 289 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 KRT2P35908 639 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CLK2P49760 499 aaKnown RBP8.39□□□□□ -1.07
LIMA1-216ENST00000552909 ADCY7P51828 1080 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CDR1P51861 262 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 RTP1P59025 263 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SARNPP82979 210 aaKnown RBP8.39□□□□□ -1.07
LIMA1-216ENST00000552909 ARHGAP1Q07960 439 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SEMA3FQ13275 785 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 TRIM60Q495X7 471 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CEP85LQ5SZL2 805 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SHC4Q6S5L8 630 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 YTHDF3Q7Z739 585 aaKnown RBP8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CNGA4Q8IV77 575 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 NOSTRINQ8IVI9 506 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 MLKLQ8NB16 471 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 OR6J1Q8NGC5 347 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CYP2W1Q8TAV3 490 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 RASGRP4Q8TDF6 673 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CPLX3Q8WVH0 158 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 CCDC51Q96ER9 411 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 RPGRIP1Q96KN7 1286 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 GDAP1L1Q96MZ0 367 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SH3GL2Q99962 352 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 TRIM6Q9C030 488 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-216ENST00000552909 ZMYND12Q9H0C1 365 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 STARD7Q9NQZ5 370 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SH3GLB2Q9NR46 395 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 ATP11BQ9Y2G3 1177 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 Q9Y3F1 56 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 TELO2Q9Y4R8 837 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 A0A1B0GUA9 196 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 MOXD2PA6NHM9 499 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SPDYE3A6NKU9 549 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 OPA1O60313 960 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 MFAP3LO75121 409 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 ITGB5P18084 799 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 BMP6P22004 513 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SMTNP53814 917 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 PLCB4Q15147 1175 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 RESP18Q5W5W9 173 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 PCNX4Q63HM2 1172 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 PCSK9Q8NBP7 692 aaKnown RBP8.39□□□□□ -1.07
LIMA1-216ENST00000552909 ACRBPQ8NEB7 543 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 AFG1LQ8WV93 481 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 VTI1AQ96AJ9 217 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 INPP4AQ96PE3 977 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-216ENST00000552909 SLC24A3Q9HC58 644 aa8.39□□□□□ -1.07
LIMA1-216ENST00000552909 A6NJR5 290 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 hCG_1984214I3L0E3 225 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 ATP9AO75110 1047 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 PSMC6P62333 389 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 SKOR1P84550 965 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 TLE2Q04725 743 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 CKAP4Q07065 602 aaKnown RBP8.38□□□□□ -1.07
LIMA1-216ENST00000552909 BIRC2Q13490 618 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 SNX17Q15036 470 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 NPY5RQ15761 445 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 HSDL1Q3SXM5 330 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 LONRF3Q496Y0 759 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 CCDC40Q4G0X9 1142 aa8.38□□□□□ -1.07
LIMA1-216ENST00000552909 PRPF38BQ5VTL8 546 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms