RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 HDAC6Q9UBN7 1215 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 PAPPA2Q9BXP8 1791 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 NFASCO94856 1347 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 PLS3P13797 630 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 LMNB1P20700 586 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 PSMC5P62195 406 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 GTF2BQ00403 316 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 RASSF7Q02833 373 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 CETN1Q12798 172 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 CLUL1Q15846 466 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 NBPF9Q3BBW0 867 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 MEI1Q5TIA1 1274 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 PADI6Q6TGC4 694 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 SCYL3Q8IZE3 742 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 SYCE1Q8N0S2 351 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 FAM71BQ8TC56 605 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 PIGOQ8TEQ8 1089 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 CDHR1Q96JP9 859 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 TLR10Q9BXR5 811 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 MLXIPQ9HAP2 919 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 FBXO28Q9NVF7 368 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 GCNT4Q9P109 453 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 ADAMTS5Q9UNA0 930 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 EXOC7Q9UPT5 735 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 DIS3Q9Y2L1 958 aaKnown RBP10.76□□□□□ -0.69
SS18-205ENST00000542420 DUSP10Q9Y6W6 482 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 NCANO14594 1321 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 WDR64B1ANS9 1081 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 FZD9O00144 591 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 HIP1RO75146 1068 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 RHOXF2BP0C7M4 288 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 NMT1P30419 496 aaKnown RBP10.76□□□□□ -0.69
SS18-205ENST00000542420 RARRES1P49788 294 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 NCKAP1LP55160 1127 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 RTP1P59025 263 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 MTMR1Q13613 665 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 CASP8Q14790 479 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 PGM5Q15124 567 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 NOL9Q5SY16 702 aaKnown RBP10.76□□□□□ -0.69
SS18-205ENST00000542420 CCDC181Q5TID7 509 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 MIGA2Q7L4E1 593 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 NLRX1Q86UT6 975 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 FAM133AQ8N9E0 248 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 SPATA4Q8NEY3 305 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 AGBL1Q96MI9 1066 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 RHOXF2Q9BQY4 288 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 EPC1Q9H2F5 836 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 COL20A1Q9P218 1284 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 CTDP1Q9Y5B0 961 aaPredicted RBP10.76□□□□□ -0.69
SS18-205ENST00000542420 CD2APQ9Y5K6 639 aa10.76□□□□□ -0.69
SS18-205ENST00000542420 MYH9P35579 1960 aaKnown RBP10.76□□□□□ -0.69
SS18-205ENST00000542420 PTPRFP10586 1907 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 A0A087X0T9 212 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 H0YCG3 227 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 FAM228BP0C875 321 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 KRT13P13646 458 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 VCAM1P19320 739 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 SLC9A1P19634 815 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 SOX5P35711 763 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 HADHBP55084 474 aaKnown RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 BFSP1Q12934 665 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 CCNI2Q6ZMN8 369 aaPredicted RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 DAW1Q8N136 415 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 EXOC4Q96A65 974 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 FAM81BQ96LP2 452 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 PDCD2LQ9BRP1 358 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 GLIS2Q9BZE0 524 aaPredicted RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 MTFR1LQ9H019 292 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 PXMP2Q9NR77 195 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 NAGPAQ9UK23 515 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 ZHX2Q9Y6X8 837 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 LCTP09848 1927 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 NFIBO00712 420 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 CHMP2AO43633 222 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 OAS2P29728 719 aaKnown RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 CCND2P30279 289 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 CASP4P49662 377 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 BACE1P56817 501 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 MRPS9P82933 396 aaKnown RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 PTK2Q05397 1052 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 KIAA0753Q2KHM9 967 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 DCAF17Q5H9S7 520 aaPredicted RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 ZNF571Q7Z3V5 609 aaPredicted RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 SLFN11Q7Z7L1 901 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 SLC30A5Q8TAD4 765 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 SPIRE2Q8WWL2 714 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 TRERF1Q96PN7 1200 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 CRACR2AQ9BSW2 395 aa10.75□□□□□ -0.69
SS18-205ENST00000542420 WRAP73Q9P2S5 460 aaPredicted RBP10.75□□□□□ -0.69
SS18-205ENST00000542420 NFKBIEO00221 500 aa10.74□□□□□ -0.69
SS18-205ENST00000542420 PDE2AO00408 941 aaPredicted RBP10.74□□□□□ -0.69
SS18-205ENST00000542420 H2AFZP0C0S5 128 aa10.74□□□□□ -0.69
SS18-205ENST00000542420 TAL1P17542 331 aaPredicted RBP10.74□□□□□ -0.69
SS18-205ENST00000542420 KLRC1P26715 233 aa10.74□□□□□ -0.69
SS18-205ENST00000542420 ITGB3BPQ13352 177 aaPredicted RBP10.74□□□□□ -0.69
SS18-205ENST00000542420 TCERG1LQ5VWI1 586 aa10.74□□□□□ -0.69
SS18-205ENST00000542420 ALKBH5Q6P6C2 394 aaKnown RBP10.74□□□□□ -0.69
SS18-205ENST00000542420 EMBQ6PCB8 327 aa10.74□□□□□ -0.69
SS18-205ENST00000542420 RNF207Q6ZRF8 634 aa10.74□□□□□ -0.69
SS18-205ENST00000542420 H2AFVQ71UI9 128 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms