RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TCF25Q9BQ70 676 aa15.36■□□□□ 0.05
SS18-204ENST00000539244 WDR64B1ANS9 1081 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 EDIL3O43854 480 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 ZNF862O60290 1169 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 OATP04181 439 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 ZSCAN20P17040 1043 aaPredicted RBP15.35■□□□□ 0.05
SS18-204ENST00000539244 HOXB8P17481 243 aaPredicted RBP15.35■□□□□ 0.05
SS18-204ENST00000539244 PTPN5P54829 565 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 APOBRQ0VD83 1088 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 PLPP4Q5VZY2 271 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 ZNF598Q86UK7 904 aaKnown RBP15.35■□□□□ 0.05
SS18-204ENST00000539244 SUGP1Q8IWZ8 645 aaKnown RBP15.35■□□□□ 0.05
SS18-204ENST00000539244 FBXL6Q8N531 539 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 BICD2Q8TD16 824 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 ASIC4Q96FT7 647 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 ZNF558Q96NG5 402 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 AGXT2Q9BYV1 514 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 AKT3Q9Y243 479 aa15.35■□□□□ 0.05
SS18-204ENST00000539244 A0A0U1RQF3 1178 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 HIDE1A8MVS5 230 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 EOMESO95936 686 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 DARSP14868 501 aaKnown RBP15.34■□□□□ 0.05
SS18-204ENST00000539244 TECP42680 631 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 GPC3P51654 580 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 KRT17Q04695 432 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 NTRK3Q16288 839 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 CLLU1OSQ5K130 101 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 IER5LQ5T953 404 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 TRMT1LQ7Z2T5 733 aaKnown RBP15.34■□□□□ 0.05
SS18-204ENST00000539244 ABI1Q8IZP0 508 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 LRRC71Q8N4P6 559 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 RIT2Q99578 217 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 ENTPD7Q9NQZ7 604 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 DISC1Q9NRI5 854 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 NRBP2Q9NSY0 501 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 SPG21Q9NZD8 308 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 SAMM50Q9Y512 469 aa15.34■□□□□ 0.05
SS18-204ENST00000539244 MSH4O15457 936 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 CDC45O75419 566 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 SFNP31947 248 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 USP11P51784 963 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 FGD1P98174 961 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 PRKCEQ02156 737 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 TCF15Q12870 199 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 PTPN21Q16825 1174 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 Q6ZUG5 572 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 SLC39A11Q8N1S5 342 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 CCDC148Q8NFR7 591 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 RSPH1Q8WYR4 309 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 CASP10Q92851 521 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 SLC5A5Q92911 643 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 BRF1Q92994 677 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 RNF26Q9BY78 433 aaPredicted RBP15.33■□□□□ 0.04
SS18-204ENST00000539244 NAP1L2Q9ULW6 460 aaPredicted RBP15.33■□□□□ 0.04
SS18-204ENST00000539244 CACNA1HO95180 2353 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 USP34Q70CQ2 3546 aa15.33■□□□□ 0.04
SS18-204ENST00000539244 CPA1P15085 419 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 PBX3P40426 434 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 JAK3P52333 1124 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 CDC42EP1Q00587 391 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 SMC1AQ14683 1233 aaKnown RBP15.32■□□□□ 0.04
SS18-204ENST00000539244 TARBP2Q15633 366 aaKnown RBP15.32■□□□□ 0.04
SS18-204ENST00000539244 TMC7Q7Z402 723 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 MRPL43Q8N983 215 aaKnown RBP15.32■□□□□ 0.04
SS18-204ENST00000539244 RDM1Q8NG50 284 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 PHKBQ93100 1093 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 PHOX2BQ99453 314 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 TRAIPQ9BWF2 469 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 MRPL9Q9BYD2 267 aaKnown RBP15.32■□□□□ 0.04
SS18-204ENST00000539244 DACT1Q9NYF0 836 aa15.32■□□□□ 0.04
SS18-204ENST00000539244 IGKV6-21A0A0C4DH24 114 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 C2orf71A6NGG8 1288 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 IFNAR1P17181 557 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 HSPA4P34932 840 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 EVCP57679 992 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 AKAP17AQ02040 695 aaKnown RBP15.31■□□□□ 0.04
SS18-204ENST00000539244 ITIH3Q06033 890 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 TBC1D8BQ0IIM8 1120 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 UGCGQ16739 394 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 TPRNQ4KMQ1 711 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 BLOC1S2Q6QNY1 142 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 B3GNT9Q6UX72 402 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 CENPQQ7L2Z9 268 aaPredicted RBP15.31■□□□□ 0.04
SS18-204ENST00000539244 SKAP1Q86WV1 359 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 CCDC136Q96JN2 1154 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 JAKMIP1Q96N16 626 aaKnown RBP15.31■□□□□ 0.04
SS18-204ENST00000539244 NECTIN4Q96NY8 510 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 CEP89Q96ST8 783 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 NIFKQ9BYG3 293 aaKnown RBP15.31■□□□□ 0.04
SS18-204ENST00000539244 SH3GLB2Q9NR46 395 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 CHST12Q9NRB3 414 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 HCFC2Q9Y5Z7 792 aa15.31■□□□□ 0.04
SS18-204ENST00000539244 CARNS1A5YM72 827 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 GAS7O60861 476 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 PSMD10O75832 226 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 Q4G0T1 1027 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 LRCH2Q5VUJ6 765 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 LLGL2Q6P1M3 1020 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 HELQQ8TDG4 1101 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 ZNF668Q96K58 619 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms