RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CCDC62Q6P9F0 684 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 B3GNT9Q6UX72 402 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 ARMCX2Q7L311 632 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 CCSER1Q9C0I3 900 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 CSRNP2Q9H175 543 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 CXXC1Q9P0U4 656 aaPredicted RBP8.31□□□□□ -1.08
CD44-228ENST00000528455 LRWD1Q9UFC0 647 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 DDX41Q9UJV9 622 aaKnown RBP8.31□□□□□ -1.08
CD44-228ENST00000528455 MCM3APO60318 1980 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 VWA3AA6NCI4 1184 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 NKRFO15226 690 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD44-228ENST00000528455 ATP9AO75110 1047 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 GADD45BO75293 160 aaPredicted RBP8.3□□□□□ -1.08
CD44-228ENST00000528455 TFRCP02786 760 aaKnown RBP8.3□□□□□ -1.08
CD44-228ENST00000528455 HMGCRP04035 888 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 XRCC6P12956 609 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD44-228ENST00000528455 KCNA2P16389 499 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 SFNP31947 248 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 UBA7P41226 1012 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 PDE4CQ08493 712 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 SPIRE1Q08AE8 756 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 TTLL4Q14679 1199 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 EPHA7Q15375 998 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 LRCH2Q5VUJ6 765 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 MFSD14CQ5VZR4 134 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 RESP18Q5W5W9 173 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 SHC4Q6S5L8 630 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 SEPT14Q6ZU15 432 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 RDM1Q8NG50 284 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 U2AF1L4Q8WU68 220 aaKnown RBP8.3□□□□□ -1.08
CD44-228ENST00000528455 SCFD2Q8WU76 684 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 CLIC6Q96NY7 704 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 APBA2Q99767 749 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 SDF4Q9BRK5 362 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 PYM1Q9BRP8 204 aaKnown RBP8.3□□□□□ -1.08
CD44-228ENST00000528455 TEKT3Q9BXF9 490 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 KATNBL1Q9H079 304 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 FAM13BQ9NYF5 915 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 Q9Y3F1 56 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 DYRK1BQ9Y463 629 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 MRVI1Q9Y6F6 885 aa8.3□□□□□ -1.08
CD44-228ENST00000528455 GAS7O60861 476 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 MBD3O95983 291 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 TXNP10599 105 aaKnown RBP8.29□□□□□ -1.08
CD44-228ENST00000528455 KRT76Q01546 638 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 SP2Q02086 613 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 LAMC2Q13753 1193 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 CELF3Q5SZQ8 465 aaKnown RBP8.29□□□□□ -1.08
CD44-228ENST00000528455 HYIQ5T013 277 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 KRT79Q5XKE5 535 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 PHLDB3Q6NSJ2 640 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 ZNF746Q6NUN9 644 aaPredicted RBP8.29□□□□□ -1.08
CD44-228ENST00000528455 ELOA2Q8IYF1 753 aaPredicted RBP8.29□□□□□ -1.08
CD44-228ENST00000528455 CCDC155Q8N6L0 562 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 ENGASEQ8NFI3 743 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 ERMNQ8TAM6 284 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 EPSTI1Q96J88 318 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 TIGD1Q96MW7 591 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 DEFB118Q96PH6 123 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 HSD17B14Q9BPX1 270 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 POLR3CQ9BUI4 534 aaPredicted RBP8.29□□□□□ -1.08
CD44-228ENST00000528455 TUFT1Q9NNX1 390 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 PAK6Q9NQU5 681 aaPredicted RBP8.29□□□□□ -1.08
CD44-228ENST00000528455 FLRT1Q9NZU1 646 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 CCDC39Q9UFE4 941 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 USP25Q9UHP3 1055 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 KCNH3Q9ULD8 1083 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 FAM184BQ9ULE4 1060 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 ZNF232Q9UNY5 417 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 HPSEQ9Y251 543 aa8.29□□□□□ -1.08
CD44-228ENST00000528455 A0A1B0GTH6 734 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 A0A1B0GVL5 298 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 DKC1O60832 514 aaKnown RBP eCLIP8.28□□□□□ -1.08
CD44-228ENST00000528455 PPFIA4O75335 1185 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 FARP2O94887 1054 aaPredicted RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 SLITRK3O94933 977 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 ZNF202O95125 648 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 ZNF865P0CJ78 1059 aaPredicted RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 RPA1P27694 616 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 MSX1P28360 303 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 TXLNAP40222 546 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 JAK3P52333 1124 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 TNFAIP2Q03169 654 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 GRIN1Q05586 938 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 FAM160A1Q05DH4 1040 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 ITGB3BPQ13352 177 aaPredicted RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 SNW1Q13573 536 aaKnown RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 CCL14Q16627 93 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 DUSP28Q4G0W2 176 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 KANK3Q6NY19 840 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 METTL7BQ6UX53 244 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 CCDC73Q6ZRK6 1079 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 USP49Q70CQ1 688 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 EEPD1Q7L9B9 569 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 DHX37Q8IY37 1157 aaKnown RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 SMAP1Q8IYB5 467 aaPredicted RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 FMR1NBQ8N0W7 255 aaPredicted RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 IQUBQ8NA54 791 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 SEPT1Q8WYJ6 367 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 TRIB2Q92519 343 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms