RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 SPATA32Q96LK8 384 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 YIPF2Q9BWQ6 316 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 IRF2BPLQ9H1B7 796 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 CERS4Q9HA82 394 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 ZFP64Q9NPA5 681 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 IL23AQ9NPF7 189 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 IFT57Q9NWB7 429 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 C9orf78Q9NZ63 289 aaPredicted RBP5.68□□□□□ -1.5
CD44-218ENST00000525469 RNF112Q9ULX5 631 aa5.68□□□□□ -1.5
CD44-218ENST00000525469 RRP15Q9Y3B9 282 aaKnown RBP5.68□□□□□ -1.5
CD44-218ENST00000525469 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.68□□□□□ -1.5
CD44-218ENST00000525469 SPTBN4Q9H254 2564 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 XIRP2A4UGR9 3374 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 A0A087WUV0 522 aaPredicted RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 ERICH4A6NGS2 130 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 EIF1AYO14602 144 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 TM4SF5O14894 197 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 DDX3YO15523 660 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 EPB41L2O43491 1005 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 SMC2O95347 1197 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 PGK1P00558 417 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 MYOGP15173 224 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 ATP2A2P16615 1042 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 ADORA2AP29274 412 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 RDXP35241 583 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 ACTN2P35609 894 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 PUM3Q15397 648 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 ECM1Q16610 540 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 PRAMEF19Q5SWL8 479 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 ARTNQ5T4W7 220 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 KRBA2Q6ZNG9 492 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 RPUSD2Q8IZ73 545 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 ARNTL2Q8WYA1 636 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 INTS4Q96HW7 963 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 GLT1D1Q96MS3 346 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 UBL7Q96S82 380 aaPredicted RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 SH3GL3Q99963 347 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 UPF3BQ9BZI7 483 aaKnown RBP5.67□□□□□ -1.5
CD44-218ENST00000525469 SUGCTQ9HAC7 445 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 NPHS2Q9NP85 383 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 TBX21Q9UL17 535 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 DDX19BQ9UMR2 479 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 CFAP54Q96N23 3096 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 ZNF536O15090 1300 aa5.67□□□□□ -1.5
CD44-218ENST00000525469 CHD7Q9P2D1 2997 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 A0A1B0GUA9 196 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 KIF28PB7ZC32 967 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 GRM8O00222 908 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 GPR182O15218 404 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 ADCY5O95622 1261 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 IGLV1-40P01703 118 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 CA3P07451 260 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 TNNT1P13805 278 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 MAPK1P28482 360 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 CYP2C18P33260 490 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 BTDP43251 543 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 KCNJ6P48051 423 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 ACLYP53396 1101 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 TRAF1Q13077 416 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 ORC1Q13415 861 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 NEDD9Q14511 834 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 ZYXQ15942 572 aaKnown RBP5.66□□□□□ -1.5
CD44-218ENST00000525469 PKN1Q16512 942 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 AP1ARQ63HQ0 302 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 SPTY2D1Q68D10 685 aaPredicted RBP5.66□□□□□ -1.5
CD44-218ENST00000525469 KRT40Q6A162 431 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 G2E3Q7L622 706 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 CCDC50Q8IVM0 306 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 C10orf67Q8IYJ2 551 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 TMEM87AQ8NBN3 555 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 TCP11Q8WWU5 503 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 SREK1Q8WXA9 508 aaKnown RBP5.66□□□□□ -1.5
CD44-218ENST00000525469 CCDC74AQ96AQ1 378 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 TCF12Q99081 682 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 CORO1BQ9BR76 489 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 NIF3L1Q9GZT8 377 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 KCNF1Q9H3M0 494 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 DDX4Q9NQI0 724 aaKnown RBP5.66□□□□□ -1.5
CD44-218ENST00000525469 GINM1Q9NU53 330 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 KIAA1522Q9P206 1035 aaPredicted RBP5.66□□□□□ -1.5
CD44-218ENST00000525469 NRBP1Q9UHY1 535 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 HERC5Q9UII4 1024 aaKnown RBP5.66□□□□□ -1.5
CD44-218ENST00000525469 ANAPC4Q9UJX5 808 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 DENND2AQ9ULE3 1009 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 FAM50BQ9Y247 325 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 ZNF236Q9UL36 1845 aa5.66□□□□□ -1.5
CD44-218ENST00000525469 CHD9Q3L8U1 2897 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 FAM186AA6NE01 2351 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 LOC100289279A0A1B0GTE1 492 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 SYCE3A1L190 88 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 CNMDO75829 334 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 IGHDP01880 384 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 AKR1A1P14550 325 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 TCF3P15923 654 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 KCNA5P22460 613 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 GRIK1P39086 918 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 ID4P47928 161 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 AP3B2Q13367 1082 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 CRYMQ14894 314 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 SLMAPQ14BN4 828 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms