RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ACVR2BQ13705 512 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 FAM47AQ5JRC9 791 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 HYIQ5T013 277 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 ARL6IP4Q66PJ3 421 aaKnown RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 Q6ZUG5 572 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 RNF180Q86T96 592 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SLFN12Q8IYM2 578 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SRBD1Q8N5C6 995 aaKnown RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 ANKRD13CQ8N6S4 541 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 CAGE1Q8TC20 777 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 UBXN4Q92575 508 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 JAKMIP1Q96N16 626 aaKnown RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 JPH2Q9BR39 696 aaPredicted RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 PDCD2LQ9BRP1 358 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PHF7Q9BWX1 381 aaPredicted RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 KCND2Q9NZV8 630 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SMG5Q9UPR3 1016 aaKnown RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 CNPY2Q9Y2B0 182 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SLC4A7Q9Y6M7 1214 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 HECTD1Q9ULT8 2610 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 GREB1Q4ZG55 1949 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 CTAGE5O15320 804 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PAPLNO95428 1278 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 KRT76Q01546 638 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 TAGLNQ01995 201 aaKnown RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 COASYQ13057 564 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PPP2R5CQ13362 524 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PDIA5Q14554 519 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PGM5Q15124 567 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SLC35G1Q2M3R5 365 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 FOXR2Q6PJQ5 311 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 METTL7BQ6UX53 244 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 ZNF365Q70YC5 407 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 ARMCX2Q7L311 632 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 NPLOC4Q8TAT6 608 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 GIPC2Q8TF65 315 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 TRIB2Q92519 343 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SLC5A5Q92911 643 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 MXRA8Q9BRK3 442 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 NFKBIZQ9BYH8 718 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 WDR11Q9BZH6 1224 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 LMAN2LQ9H0V9 348 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 ALG2Q9H553 416 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PARD6AQ9NPB6 346 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 CLDND1Q9NY35 253 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 CD207Q9UJ71 328 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 STX8Q9UNK0 236 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SORCS3Q9UPU3 1222 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 WDR81Q562E7 1941 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 BPTFQ12830 3046 aa3.21□□□□□ -1.89
MCF2-208ENST00000519895 KLF18A0A0U1RQI7 1052 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 FSD2A1L4K1 749 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 INPPL1O15357 1258 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 TLR3O15455 904 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 BAIAP3O94812 1187 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CD4P01730 458 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 PRB1P04280 392 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CYP2C8P10632 490 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 TLE2Q04725 743 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CACNB2Q08289 660 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 MTMR3Q13615 1198 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CELF3Q5SZQ8 465 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 PRR23CQ6ZRP0 262 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CLEC17AQ6ZS10 378 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 RPUSD2Q8IZ73 545 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 ZBTB44Q8NCP5 570 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ZNF592Q92610 1267 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 APBB2Q92870 758 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 AK8Q96MA6 479 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 MTG1Q9BT17 334 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 PORCNQ9H237 461 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ZSCAN16Q9H4T2 348 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 MAGEF1Q9HAY2 307 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CDHR5Q9HBB8 845 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 USP25Q9UHP3 1055 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 DDX41Q9UJV9 622 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 PCDHA1Q9Y5I3 950 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 PCNX1Q96RV3 2341 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ITPR3Q14573 2671 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CENPFP49454 3210 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 MBLAC1A4D2B0 266 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 KIF28PB7ZC32 967 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ERVH48-1M5A8F1 160 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 PPP1R11O60927 126 aaPredicted RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 CXCL10P02778 98 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 RARBP10826 455 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 GNAT1P11488 350 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 CASTP20810 708 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 CSRP1P21291 193 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 SOX11P35716 441 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ADAM17P78536 824 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 AKAP17AQ02040 695 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 PTK7Q13308 1070 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 SF3A1Q15459 793 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 SLFNL1Q499Z3 407 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 ZNF484Q5JVG2 852 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 Q6ZNB5 142 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 DPP9Q86TI2 863 aa3.21□□□□□ -1.9
MCF2-208ENST00000519895 NSUN7Q8NE18 718 aaKnown RBP3.21□□□□□ -1.9
MCF2-208ENST00000519895 MOCOSQ96EN8 888 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms