RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 DNAAF5Q86Y56 855 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 LRRC8AQ8IWT6 810 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SVOPQ8N4V2 548 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SCFD2Q8WU76 684 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 APBB2Q92870 758 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 NUDCD1Q96RS6 583 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 KRT12Q99456 494 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MNTQ99583 582 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ASPSCR1Q9BZE9 553 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 WWP1Q9H0M0 922 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PRDM11Q9NQV5 511 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 IARS2Q9NSE4 1012 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 INTS13Q9NVM9 706 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 FBXO9Q9UK97 447 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 SYNPO2Q9UMS6 1093 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SMG5Q9UPR3 1016 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 ZNF652Q9Y2D9 606 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 LRCH1Q9Y2L9 728 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 AP3B1O00203 1094 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 IFIT3O14879 490 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 GSTA4O15217 222 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TBC1D4O60343 1298 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 CNOT3O75175 753 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 KLHL2O95198 593 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 CHEK2O96017 543 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 FGFR2P21802 821 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PTGS2P35354 604 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 EIF2B2P49770 351 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 CCT8P50990 548 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 GUCY2FP51841 1108 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TRAP1Q12931 704 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 DLG1Q12959 904 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PDAP1Q13442 181 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 TOP3AQ13472 1001 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 KYNUQ16719 465 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ADCK5Q3MIX3 580 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 FAM45BPQ6NSW5 357 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TTC27Q6P3X3 843 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 GIMAP6Q6P9H5 292 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SARM1Q6SZW1 724 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PEX26Q7Z412 305 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 CCDC103Q8IW40 242 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SLC17A8Q8NDX2 589 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 MSANTD3Q96H12 275 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZBTB18Q99592 522 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 GORASP1Q9BQQ3 440 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 NEUROG2Q9H2A3 272 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SLC6A15Q9H2J7 730 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SNX25Q9H3E2 840 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 KDM4CQ9H3R0 1056 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 EXOC7Q9UPT5 735 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 CBY1Q9Y3M2 126 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SHANK3Q9BYB0 1731 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 KCNK1O00180 336 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 WASLO00401 505 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 SPOPO43791 374 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 APOL3O95236 402 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 RALBP11234 206 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 GNAT1P11488 350 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ATF2P15336 505 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 NPR1P16066 1061 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZNF12P17014 697 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 NSFP46459 744 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 CLCN6P51797 869 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PMS1P54277 932 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 PPP2R2AP63151 447 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 RCN2Q14257 317 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 KLHL38Q2WGJ6 581 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZCWPW2Q504Y3 356 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TTC22Q5TAA0 569 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 HAUS3Q68CZ6 603 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 MZT2BQ6NZ67 158 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ANKRD13DQ6ZTN6 518 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ACAD11Q709F0 780 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 RASSF3Q86WH2 238 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 DZIP3Q86Y13 1208 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 KRT78Q8N1N4 520 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PANK1Q8TE04 598 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 MIEF2Q96C03 454 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ITPKCQ96DU7 683 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ART5Q96L15 291 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 DEPDC7Q96QD5 511 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 FICDQ9BVA6 458 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 KATNAL1Q9BW62 490 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 WDR12Q9GZL7 423 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 BICC1Q9H694 974 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 TUBGCP4Q9UGJ1 667 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 GLS2Q9UI32 602 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TNNQ9UQP3 1299 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 NUP155O75694 1391 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PDS5AQ29RF7 1337 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 TNS1Q9HBL0 1735 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 CTIFO43310 598 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 FAM13AO94988 1023 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SEMA3DO95025 777 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 OCM2P0CE71 109 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 OCMP0CE72 109 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 F8A1P23610 371 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ACAT1P24752 427 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms