RNA–Protein interactions for RNA: ENST00000508171.5

LIN54-207, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best)

Gene LIN54, Length 2,684 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-207ENST00000508171 SHOX2O60902 331 aaPredicted RBP11.9□□□□□ -0.5
LIN54-207ENST00000508171 LRRN2O75325 713 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 ITGB5P18084 799 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 SOX5P35711 763 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 IRAK1P51617 712 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 PAK2Q13177 524 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 PEX26Q7Z412 305 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 SRLQ86TD4 932 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 VPS36Q86VN1 386 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 DDX42Q86XP3 938 aaKnown RBP eCLIP11.9□□□□□ -0.5
LIN54-207ENST00000508171 DAW1Q8N136 415 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 SH2D3CQ8N5H7 860 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 KCTD17Q8N5Z5 321 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 SLC30A5Q8TAD4 765 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 FAM151AQ8WW52 585 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 RUFY1Q96T51 708 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 SH2D3AQ9BRG2 576 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 VCPKMTQ9H867 229 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 DMAC2Q9NW81 257 aa11.9□□□□□ -0.5
LIN54-207ENST00000508171 GOLGA8KD6RF30 607 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 PPP1R12BO60237 982 aaPredicted RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 ITGA4P13612 1032 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 FERP16591 822 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 HMGB2P26583 209 aaKnown RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 ERVK-9P63128 1117 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 PPFIA1Q13136 1202 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 DLGAP5Q15398 846 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 IFI16Q16666 785 aaKnown RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 B3GNT9Q6UX72 402 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 HS2ST1Q7LGA3 356 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 TRMT1LQ7Z2T5 733 aaKnown RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 SLFN11Q7Z7L1 901 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 HOOK2Q96ED9 719 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 PBKQ96KB5 322 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 STK33Q9BYT3 514 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 DDX47Q9H0S4 455 aaKnown RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 SYNPO2Q9UMS6 1093 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 STXBP5LQ9Y2K9 1186 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 FRMD4BQ9Y2L6 1034 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 MRPL11Q9Y3B7 192 aaKnown RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 SART1O43290 800 aaKnown RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 HIP1RO75146 1068 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 ABCB4P21439 1286 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 TNNC1P63316 161 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 DLG4P78352 724 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 MAPK7Q13164 816 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 NNTQ13423 1086 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 ARHGAP44Q17R89 818 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 CFAP58Q5T655 872 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 PHLDB3Q6NSJ2 640 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 RSBN1LQ6PCB5 846 aaPredicted RBP11.89□□□□□ -0.51
LIN54-207ENST00000508171 NT5DC3Q86UY8 548 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 PALB2Q86YC2 1186 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 C10orf67Q8IYJ2 551 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 SYCP3Q8IZU3 236 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 SLC35G2Q8TBE7 412 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 ACTRT1Q8TDG2 376 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 CAPS2Q9BXY5 557 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 WDR11Q9BZH6 1224 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 PCIF1Q9H4Z3 704 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 COL20A1Q9P218 1284 aa11.89□□□□□ -0.51
LIN54-207ENST00000508171 CES2O00748 559 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 EXOC3O60645 756 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 PPFIA4O75335 1185 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 INPP5BP32019 993 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 TRAF1Q13077 416 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 NFIL3Q16649 462 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 MKNK1Q9BUB5 465 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 TEKT3Q9BXF9 490 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 TAS2R14Q9NYV8 317 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 SEL1LQ9UBV2 794 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 FEZ2Q9UHY8 353 aaPredicted RBP11.88□□□□□ -0.51
LIN54-207ENST00000508171 NOC2LQ9Y3T9 749 aaKnown RBP11.88□□□□□ -0.51
LIN54-207ENST00000508171 COL2A1P02458 1487 aaPredicted RBP11.88□□□□□ -0.51
LIN54-207ENST00000508171 IGSF9BQ9UPX0 1349 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 ARHGEF35A5YM69 484 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 BUB1BO60566 1050 aaPredicted RBP11.88□□□□□ -0.51
LIN54-207ENST00000508171 ECHS1P30084 290 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 HLTFQ14527 1009 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIN54-207ENST00000508171 GRIPAP1Q4V328 841 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 PADI6Q6TGC4 694 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 ZSWIM2Q8NEG5 633 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 IL31RAQ8NI17 732 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.88□□□□□ -0.511e-7■■■■□ 24.9
LIN54-207ENST00000508171 MXRA8Q9BRK3 442 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 INTS2Q9H0H0 1204 aaKnown RBP11.88□□□□□ -0.51
LIN54-207ENST00000508171 KCNH7Q9NS40 1196 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 ODF2LQ9ULJ1 636 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 PPP1R9AQ9ULJ8 1098 aa11.88□□□□□ -0.51
LIN54-207ENST00000508171 PGRMC1O00264 195 aaKnown RBP11.87□□□□□ -0.51
LIN54-207ENST00000508171 FOXN3O00409 490 aaPredicted RBP11.87□□□□□ -0.51
LIN54-207ENST00000508171 KRIT1O00522 736 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 NFIBO00712 420 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 PPP1R37O75864 691 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 ATP1A2P50993 1020 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 LMO3Q8TAP4 145 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 SYT11Q9BT88 431 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 STRA6Q9BX79 667 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 ISCUQ9H1K1 167 aa11.87□□□□□ -0.51
LIN54-207ENST00000508171 TAF1DQ9H5J8 278 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms