RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 MAF1Q9H063 256 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SEPT9Q9UHD8 586 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 INTUQ9ULD6 942 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 THSD7AQ9UPZ6 1657 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 PI4KAP2A4QPH2 592 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 TADA3O75528 432 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SLU7O95391 586 aaKnown RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 HLTFQ14527 1009 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP54-216ENST00000498143 MYO1HQ8N1T3 1032 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 PI4KAP1Q8N8J0 262 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 NUF2Q9BZD4 464 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP54-216ENST00000498143 TTC12Q9H892 705 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 GINM1Q9NU53 330 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 ZMIZ1Q9ULJ6 1067 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 MINDY4BA8MYZ0 360 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SART1O43290 800 aaKnown RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 LUC7L3O95232 432 aaKnown RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 CHGBP05060 677 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SSBP05455 408 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP54-216ENST00000498143 PPM1AP35813 382 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 ADCY2Q08462 1091 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 ARID5BQ14865 1188 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 PTPN21Q16825 1174 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 IQCEQ6IPM2 695 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 GATAD2AQ86YP4 633 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 IL17REQ8NFR9 667 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SMC6Q96SB8 1091 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 BAG1Q99933 345 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 PLSCR2Q9NRY7 297 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 ECHDC1Q9NTX5 307 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 NRBP1Q9UHY1 535 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 AKAP11Q9UKA4 1901 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 OTOGLQ3ZCN5 2332 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 TRIM64A6NGJ6 449 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 TRIM64BA6NI03 449 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 TIMM44O43615 452 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 STAMBPO95630 424 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 PUM3Q15397 648 aaKnown RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 SDE2Q6IQ49 451 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SRLQ86TD4 932 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 CCDC150Q8NCX0 1101 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 CPLX3Q8WVH0 158 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 NLRP7Q8WX94 980 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP54-216ENST00000498143 MTRF1LQ9UGC7 380 aaKnown RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 STX8Q9UNK0 236 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 INPP5FQ9Y2H2 1132 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 USP15Q9Y4E8 981 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 SPTBN4Q9H254 2564 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 TRIM43BA6NCK2 446 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 TBKBP1A7MCY6 615 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 RHOBTB1O94844 696 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 CFBP00751 764 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 TXNP10599 105 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 JUPP14923 745 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 HNRNPH2P55795 449 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 CCT2P78371 535 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 CUL3Q13618 768 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 C11orf91Q3C1V1 193 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 FOXR1Q6PIV2 292 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 ANGPTL8Q6UXH0 198 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 LRRC8DQ7L1W4 858 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 CATIPQ7Z7H3 387 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 SUN5Q8TC36 379 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 LZICQ8WZA0 190 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 TRIM43Q96BQ3 446 aaPredicted RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 SNX5Q9Y5X3 404 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 GMEB1Q9Y692 573 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 LAMC1P11047 1609 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 CCDC171Q6TFL3 1326 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 ATXN7O15265 892 aaPredicted RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 SMIM24O75264 130 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 B3GALNT1O75752 331 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 UQCRFS1P1P0C7P4 283 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 SLC8A1P32418 973 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 GJA5P36382 358 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 MAGEA9P43362 315 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 MCM2P49736 904 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 ATXN1P54253 815 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 APOBRQ0VD83 1088 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 INAVAQ3KP66 663 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 SWT1Q5T5J6 900 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 DCLRE1AQ6PJP8 1040 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 KLHDC4Q8TBB5 520 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 FAM129AQ9BZQ8 928 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 NAT10Q9H0A0 1025 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 PORCNQ9H237 461 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 TBC1D17Q9HA65 648 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 ARFGAP3Q9NP61 516 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 PCSK1NQ9UHG2 260 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 PHTF1Q9UMS5 762 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 MAP3K7O43318 606 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 MTRF1O75570 445 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 SKIP12755 728 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 CLK2P49760 499 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 ZNF445P59923 1031 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 ELOAQ14241 798 aaKnown RBP5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms