RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 DARSP14868 501 aaKnown RBP20.28■□□□□ 0.84
COL9A3-214ENST00000490398 CUL4AQ13619 759 aa20.28■□□□□ 0.84
COL9A3-214ENST00000490398 XKR9Q5GH70 373 aa20.28■□□□□ 0.84
COL9A3-214ENST00000490398 NLRP7Q8WX94 980 aa20.28■□□□□ 0.84
COL9A3-214ENST00000490398 ZNF689Q96CS4 500 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-214ENST00000490398 FDXACB1Q9BRP7 624 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-214ENST00000490398 DHX33Q9H6R0 707 aaKnown RBP20.28■□□□□ 0.84
COL9A3-214ENST00000490398 RGS18Q9NS28 235 aa20.28■□□□□ 0.84
COL9A3-214ENST00000490398 SMC3Q9UQE7 1217 aa20.28■□□□□ 0.84
COL9A3-214ENST00000490398 GPR182O15218 404 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 DKC1O60832 514 aaKnown RBP eCLIP20.27■□□□□ 0.84
COL9A3-214ENST00000490398 DGKIO75912 1065 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 LYPLA2O95372 231 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 EIF4BP23588 611 aaKnown RBP20.27■□□□□ 0.84
COL9A3-214ENST00000490398 MCTP1Q6DN14 999 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 RHPN2Q8IUC4 686 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 MICALL1Q8N3F8 863 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 IL27Q8NEV9 243 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 PIGOQ8TEQ8 1089 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 XPNPEP1Q9NQW7 623 aa20.27■□□□□ 0.84
COL9A3-214ENST00000490398 TTC3P53804 2025 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 C9IYK1 514 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 TRAPPC10P48553 1259 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 IL17AQ16552 155 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 EPC2Q52LR7 807 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 CATSPER3Q86XQ3 398 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 NPAS4Q8IUM7 802 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 PRPF31Q8WWY3 499 aaKnown RBP20.26■□□□□ 0.83
COL9A3-214ENST00000490398 SCLT1Q96NL6 688 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 NOL7Q9UMY1 257 aaKnown RBP20.26■□□□□ 0.83
COL9A3-214ENST00000490398 ADGRA3Q8IWK6 1321 aa20.26■□□□□ 0.83
COL9A3-214ENST00000490398 COL4A4P53420 1690 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-214ENST00000490398 DENND3A2RUS2 1198 aa20.25■□□□□ 0.83
COL9A3-214ENST00000490398 POU3F3P20264 500 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-214ENST00000490398 SARSP49591 514 aaKnown RBP20.25■□□□□ 0.83
COL9A3-214ENST00000490398 POLGP54098 1239 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-214ENST00000490398 PTGDRQ13258 359 aa20.25■□□□□ 0.83
COL9A3-214ENST00000490398 ORC2Q13416 577 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-214ENST00000490398 EMC2Q15006 297 aa20.25■□□□□ 0.83
COL9A3-214ENST00000490398 ECM1Q16610 540 aa20.25■□□□□ 0.83
COL9A3-214ENST00000490398 PAN2Q504Q3 1202 aaKnown RBP20.25■□□□□ 0.83
COL9A3-214ENST00000490398 FIBCD1Q8N539 461 aa20.25■□□□□ 0.83
COL9A3-214ENST00000490398 NLRP4Q96MN2 994 aa20.25■□□□□ 0.83
COL9A3-214ENST00000490398 H3BQV1 296 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 RFC5P40937 340 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 RARRES1P49788 294 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 DNM2P50570 870 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 FAM102BQ5T8I3 360 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 POTEGQ6S5H5 508 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 OTUD6AQ7L8S5 288 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.24■□□□□ 0.83
COL9A3-214ENST00000490398 TMEM192Q8IY95 271 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 FBXO22Q8NEZ5 403 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 NEK9Q8TD19 979 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 SLC7A3Q8WY07 619 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 MINDY3Q9H8M7 445 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 IFT122Q9HBG6 1241 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.24■□□□□ 0.83
COL9A3-214ENST00000490398 HCSTQ9UBK5 93 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 KIF3AQ9Y496 699 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-214ENST00000490398 COL4A3BPQ9Y5P4 624 aa20.24■□□□□ 0.83
COL9A3-214ENST00000490398 MRPL42Q9Y6G3 142 aaKnown RBP20.24■□□□□ 0.83
COL9A3-214ENST00000490398 PRRC2BQ5JSZ5 2229 aaKnown RBP20.23■□□□□ 0.83
COL9A3-214ENST00000490398 FGFR1P11362 822 aa20.23■□□□□ 0.83
COL9A3-214ENST00000490398 FAM189BP81408 668 aa20.23■□□□□ 0.83
COL9A3-214ENST00000490398 LAMTOR4Q0VGL1 99 aa20.23■□□□□ 0.83
COL9A3-214ENST00000490398 BTG3Q14201 252 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-214ENST00000490398 LARP1BQ659C4 914 aaKnown RBP20.23■□□□□ 0.83
COL9A3-214ENST00000490398 SLC24A5Q71RS6 500 aa20.23■□□□□ 0.83
COL9A3-214ENST00000490398 GCOM2Q9BZD3 368 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-214ENST00000490398 ANKEF1Q9NU02 776 aa20.23■□□□□ 0.83
COL9A3-214ENST00000490398 RNF19AQ9NV58 838 aa20.23■□□□□ 0.83
COL9A3-214ENST00000490398 PP2D1A8MPX8 630 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 SRGAP2CP0DJJ0 459 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 FXR2P51116 673 aaKnown RBP eCLIP20.22■□□□□ 0.83
COL9A3-214ENST00000490398 ZNF410Q86VK4 478 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 ASAP3Q8TDY4 903 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 JPH2Q9BR39 696 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-214ENST00000490398 POLR3CQ9BUI4 534 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-214ENST00000490398 TUFT1Q9NNX1 390 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 C1orf112Q9NSG2 853 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 FOXD4L1Q9NU39 408 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 PPME1Q9Y570 386 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 PCDHB7Q9Y5E2 793 aa20.22■□□□□ 0.83
COL9A3-214ENST00000490398 STAG3L1P0CL83 205 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 CTNNB1P35222 781 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 ODR4Q5SWX8 454 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 FERMT3Q86UX7 667 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 ZNF710Q8N1W2 664 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 PSPC1Q8WXF1 523 aaKnown RBP20.21■□□□□ 0.83
COL9A3-214ENST00000490398 CLP1Q92989 425 aaKnown RBP20.21■□□□□ 0.83
COL9A3-214ENST00000490398 MTRQ99707 1265 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 GPRC5CQ9NQ84 441 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 LRFN2Q9ULH4 789 aa20.21■□□□□ 0.83
COL9A3-214ENST00000490398 ARID2Q68CP9 1835 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 GTPBP6O43824 516 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-214ENST00000490398 USO1O60763 962 aaKnown RBP20.2■□□□□ 0.82
COL9A3-214ENST00000490398 ATF7P17544 494 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-214ENST00000490398 RPA1P27694 616 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms