RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 PSD3Q9NYI0 1048 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 PRDM4Q9UKN5 801 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 ZNF185O15231 689 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 P4HA2O15460 535 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 ERCC3P19447 782 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 OAZ1P54368 228 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 NPEPPSP55786 919 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 PTK2Q05397 1052 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 KCNA1Q09470 495 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 CASP8Q14790 479 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 ZNF571Q7Z3V5 609 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-212ENST00000477970 SPATA4Q8NEY3 305 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 GCNT4Q9P109 453 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 FRMD4BQ9Y2L6 1034 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 ARID2Q68CP9 1835 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 NFIBO00712 420 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 HIP1RO75146 1068 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 FLOT1O75955 427 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 HSPA6P17066 643 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 FMO5P49326 533 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 JAK3P52333 1124 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 ODR4Q5SWX8 454 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 C4orf19Q8IY42 314 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 CAPZA3Q96KX2 299 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 C12orf42Q96LP6 360 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 STK33Q9BYT3 514 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 MED4Q9NPJ6 270 aa13.34□□□□□ -0.27
PTPRF-212ENST00000477970 POLR2AP24928 1970 aaKnown RBP13.34□□□□□ -0.27
PTPRF-212ENST00000477970 ACTN1P12814 892 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 SFNP31947 248 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 UBXN2AP68543 259 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 MRPS9P82933 396 aaKnown RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 ITGB3BPQ13352 177 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 DCAF17Q5H9S7 520 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 PADI6Q6TGC4 694 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 CCNI2Q6ZMN8 369 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 VPS36Q86VN1 386 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 COG1Q8WTW3 980 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 HVCN1Q96D96 273 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 ST7Q9NRC1 585 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 LARSQ9P2J5 1176 aaKnown RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 KLRC1P26715 233 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 STAT1P42224 750 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 PAFAH1B1P43034 410 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 QARSP47897 775 aaKnown RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 APBA1Q02410 837 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 PGM5Q15124 567 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 NAGPAQ9UK23 515 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 MYH10P35580 1976 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 CLIC2O15247 247 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 N4BP1O75113 896 aaKnown RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 ENPEPQ07075 957 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 CFAP221Q4G0U5 840 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 ZC2HC1CQ53FD0 456 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 NFRKBQ6P4R8 1299 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 SLC30A5Q8TAD4 765 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 CALR3Q96L12 384 aaKnown RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 SYT11Q9BT88 431 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 BCAS3Q9H6U6 928 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 ANKEF1Q9NU02 776 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 ADAMTS1Q9UHI8 967 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 CNOT7Q9UIV1 285 aaKnown RBP13.33□□□□□ -0.28
PTPRF-212ENST00000477970 ZHX2Q9Y6X8 837 aa13.33□□□□□ -0.28
PTPRF-212ENST00000477970 WDR81Q562E7 1941 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 COL11A1P12107 1806 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-212ENST00000477970 ZBTB39O15060 712 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 MAFGO15525 162 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 ZBED4O75132 1171 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 CCDC172P0C7W6 258 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 PLS3P13797 630 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 VCAM1P19320 739 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 RARRES1P49788 294 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 MTMR1Q13613 665 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 KIAA0753Q2KHM9 967 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 DCAF15Q66K64 600 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 BANK1Q8NDB2 785 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 IL31RAQ8NI17 732 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 OLIG1Q8TAK6 271 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 IWS1Q96ST2 819 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 ADAMTS5Q9UNA0 930 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 SFI1A8K8P3 1242 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 PALMO75781 387 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 CYP2C19P33261 490 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 APLP1P51693 650 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 GTF2BQ00403 316 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 KRT76Q01546 638 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 FAM71BQ8TC56 605 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 AENQ8WTP8 325 aaKnown RBP13.32□□□□□ -0.28
PTPRF-212ENST00000477970 ACCSQ96QU6 501 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 ZMYND15Q9H091 742 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 AS3MTQ9HBK9 375 aa13.32□□□□□ -0.28
PTPRF-212ENST00000477970 SOX5P35711 763 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 NCKAP1LP55160 1127 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 C2orf54Q08AI8 447 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 BFSP1Q12934 665 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 INTS8Q75QN2 995 aaKnown RBP13.31□□□□□ -0.28
PTPRF-212ENST00000477970 SLFN11Q7Z7L1 901 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 DRC1Q96MC2 740 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.31□□□□□ -0.28
PTPRF-212ENST00000477970 PXMP2Q9NR77 195 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms