RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 GRIN2DO15399 1336 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SH3TC1Q8TE82 1336 aa3□□□□□ -1.93
LIG4-203ENST00000442234 TMEM221A6NGB7 291 aa3□□□□□ -1.93
LIG4-203ENST00000442234 DNM1LO00429 736 aa3□□□□□ -1.93
LIG4-203ENST00000442234 WDR46O15213 610 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 PQBP1O60828 265 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 IFIT2P09913 472 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 ETS2P15036 469 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ZKSCAN1P17029 563 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 DDX5P17844 614 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 USP14P54578 494 aa3□□□□□ -1.93
LIG4-203ENST00000442234 AK2P54819 239 aa3□□□□□ -1.93
LIG4-203ENST00000442234 GPSM2P81274 684 aa3□□□□□ -1.93
LIG4-203ENST00000442234 CRHR2Q13324 411 aa3□□□□□ -1.93
LIG4-203ENST00000442234 LBRQ14739 615 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 SAFBQ15424 915 aaKnown RBP eCLIP3□□□□□ -1.93
LIG4-203ENST00000442234 USH1GQ495M9 461 aa3□□□□□ -1.93
LIG4-203ENST00000442234 METTL24Q5JXM2 366 aa3□□□□□ -1.93
LIG4-203ENST00000442234 CCDC102BQ68D86 513 aa3□□□□□ -1.93
LIG4-203ENST00000442234 TOGARAM2Q6ZUX3 1019 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SPATA24Q86W54 205 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SKA1Q96BD8 255 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ARL8AQ96BM9 186 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ANKRD27Q96NW4 1050 aa3□□□□□ -1.93
LIG4-203ENST00000442234 CCDC113Q9H0I3 377 aa3□□□□□ -1.93
LIG4-203ENST00000442234 RSPH9Q9H1X1 276 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 PHAXQ9H814 394 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 SH2B1Q9NRF2 756 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 ATAD3AQ9NVI7 634 aa3□□□□□ -1.93
LIG4-203ENST00000442234 FANCLQ9NW38 375 aa3□□□□□ -1.93
LIG4-203ENST00000442234 MAGEC2Q9UBF1 373 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 PALD1Q9ULE6 856 aa3□□□□□ -1.93
LIG4-203ENST00000442234 GINS2Q9Y248 185 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ZHX2Q9Y6X8 837 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SBF2Q86WG5 1849 aa3□□□□□ -1.93
LIG4-203ENST00000442234 PXDNQ92626 1479 aa3□□□□□ -1.93
LIG4-203ENST00000442234 UBN2Q6ZU65 1347 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ANKRD62A6NC57 917 aa3□□□□□ -1.93
LIG4-203ENST00000442234 POTECB2RU33 542 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ERVV-2B6SEH9 535 aa3□□□□□ -1.93
LIG4-203ENST00000442234 GCOM1H8Y6P7 765 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 TEX28O15482 410 aa3□□□□□ -1.93
LIG4-203ENST00000442234 PRC1O43663 620 aa3□□□□□ -1.93
LIG4-203ENST00000442234 DKC1O60832 514 aaKnown RBP eCLIP3□□□□□ -1.93
LIG4-203ENST00000442234 MTRF1O75570 445 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 MYZAPP0CAP1 466 aa3□□□□□ -1.93
LIG4-203ENST00000442234 RFC1P35251 1148 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 PAFAH1B1P43034 410 aa3□□□□□ -1.93
LIG4-203ENST00000442234 CACNA2D1P54289 1103 aa3□□□□□ -1.93
LIG4-203ENST00000442234 MAP3K7CLP57077 242 aa3□□□□□ -1.93
LIG4-203ENST00000442234 PPP4CP60510 307 aa3□□□□□ -1.93
LIG4-203ENST00000442234 APBA1Q02410 837 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SP4Q02446 784 aa3□□□□□ -1.93
LIG4-203ENST00000442234 PDE4BQ07343 736 aa3□□□□□ -1.93
LIG4-203ENST00000442234 RALGDSQ12967 914 aa3□□□□□ -1.93
LIG4-203ENST00000442234 STK3Q13188 491 aa3□□□□□ -1.93
LIG4-203ENST00000442234 NMIQ13287 307 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 BTG3Q14201 252 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 KCTD21Q4G0X4 260 aa3□□□□□ -1.93
LIG4-203ENST00000442234 HSP90AA5PQ58FG0 334 aa3□□□□□ -1.93
LIG4-203ENST00000442234 TJAP1Q5JTD0 557 aa3□□□□□ -1.93
LIG4-203ENST00000442234 MFSD14BQ5SR56 506 aa3□□□□□ -1.93
LIG4-203ENST00000442234 AGAP9Q5VTM2 703 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ALS2CLQ60I27 953 aa3□□□□□ -1.93
LIG4-203ENST00000442234 CREB3L3Q68CJ9 461 aa3□□□□□ -1.93
LIG4-203ENST00000442234 WDR93Q6P2C0 686 aa3□□□□□ -1.93
LIG4-203ENST00000442234 TRIM67Q6ZTA4 783 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ANO5Q75V66 913 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SESTD1Q86VW0 696 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SLC7A5P1Q8MH63 180 aa3□□□□□ -1.93
LIG4-203ENST00000442234 CPXCR1Q8N123 301 aa3□□□□□ -1.93
LIG4-203ENST00000442234 NECAB1Q8N987 351 aa3□□□□□ -1.93
LIG4-203ENST00000442234 ST13P5Q8NFI4 369 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 PRPF31Q8WWY3 499 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 MYLIPQ8WY64 445 aa3□□□□□ -1.93
LIG4-203ENST00000442234 PRCCQ92733 491 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 LENG1Q96BZ8 264 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 RRP36Q96EU6 259 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 CCDC42Q96M95 316 aa3□□□□□ -1.93
LIG4-203ENST00000442234 CCDC43Q96MW1 224 aaKnown RBP3□□□□□ -1.93
LIG4-203ENST00000442234 OLFM3Q96PB7 478 aa3□□□□□ -1.93
LIG4-203ENST00000442234 RAB3IPQ96QF0 476 aaPredicted RBP3□□□□□ -1.93
LIG4-203ENST00000442234 HAUS7Q99871 368 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SELENOSQ9BQE4 189 aa3□□□□□ -1.93
LIG4-203ENST00000442234 OSBPL7Q9BZF2 842 aa3□□□□□ -1.93
LIG4-203ENST00000442234 PANK4Q9NVE7 773 aa3□□□□□ -1.93
LIG4-203ENST00000442234 TCHHQ07283 1943 aa3□□□□□ -1.93
LIG4-203ENST00000442234 SETXQ7Z333 2677 aaKnown RBP2.99□□□□□ -1.93
LIG4-203ENST00000442234 PTPN13Q12923 2485 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 PTPRQQ9UMZ3 2332 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 DCCP43146 1447 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 SLIT1O75093 1534 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 AP3B1O00203 1094 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 CPLX1O14810 134 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 SART1O43290 800 aaKnown RBP2.99□□□□□ -1.93
LIG4-203ENST00000442234 STAM2O75886 525 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 KRT75O95678 551 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 LDHBP07195 334 aaKnown RBP2.99□□□□□ -1.93
LIG4-203ENST00000442234 CCNFP41002 786 aa2.99□□□□□ -1.93
LIG4-203ENST00000442234 HALP42357 657 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms