RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TTC36A6NLP5 189 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 CDC37Q16543 378 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 QRICH1Q2TAL8 776 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 ASPRV1Q53RT3 343 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 KAZNQ674X7 775 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 TBC1D22AQ8WUA7 517 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 IKZF4Q9H2S9 585 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 AZI2Q9H6S1 392 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 OSGEPQ9NPF4 335 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 ADAMTSL3P82987 1691 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 K7ENM7 598 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 AGPSO00116 658 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 PDHBP11177 359 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 MMP14P50281 582 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 GALCP54803 685 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 MTM1Q13496 603 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 CUL3Q13618 768 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 DRAP1Q14919 205 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 FAM47EQ6ZV65 393 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 LONP2Q86WA8 852 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 MYLK4Q86YV6 388 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 KLHL29Q96CT2 875 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 NAP1L3Q99457 506 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 BLOC1S4Q9NUP1 217 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 DBR1Q9UK59 544 aaKnown RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 ATMINO43313 823 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-206ENST00000405805 EVI5O60447 810 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 LGR5O75473 907 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 PRPHP41219 470 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 GCLMP48507 274 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 AENQ8WTP8 325 aaKnown RBP12.87□□□□□ -0.35
HMGB1-206ENST00000405805 NSMCE1Q8WV22 266 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 HEMGNQ9BXL5 484 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 OSBPL1AQ9BXW6 950 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 FGFBP2Q9BYJ0 223 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 NKIRAS1Q9NYS0 192 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 RNF14Q9UBS8 474 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 AFF2P51816 1311 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 PPEF1O14829 653 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-206ENST00000405805 STX2P32856 288 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 IGBP1P78318 339 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 DEUP1Q05D60 604 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 VPS72Q15906 364 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 MEA1Q16626 185 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 SUGP1Q8IWZ8 645 aaKnown RBP12.87□□□□□ -0.35
HMGB1-206ENST00000405805 USP38Q8NB14 1042 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 MYCBPAPQ8TBZ2 947 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 ZNF384Q8TF68 577 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 PNMA5Q96PV4 448 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 PLEKHG2Q9H7P9 1386 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 PALM3A6NDB9 673 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-206ENST00000405805 ADCY8P40145 1251 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 ERFP50548 548 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 PSMC6P62333 389 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 PPP2R2AP63151 447 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 SETDB1Q15047 1291 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 THEMIS2Q5TEJ8 643 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 C6orf163Q5TEZ5 329 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 NUGGCQ68CJ6 796 aa12.87□□□□□ -0.35
HMGB1-206ENST00000405805 GJD4Q96KN9 370 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-206ENST00000405805 ARHGAP4P98171 946 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 SEPT2Q15019 361 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 NAB2Q15742 525 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 PTGISQ16647 500 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 KNOP1Q1ED39 458 aaKnown RBP12.86□□□□□ -0.35
HMGB1-206ENST00000405805 GLE1Q53GS7 698 aaKnown RBP12.86□□□□□ -0.35
HMGB1-206ENST00000405805 SH2D4BQ5SQS7 431 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 TEKT1Q969V4 418 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 CYFIP2Q96F07 1278 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 PBKQ96KB5 322 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.86□□□□□ -0.356e-8■□□□□ 10.3
HMGB1-206ENST00000405805 TRIM7Q9C029 511 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 ZCWPW1Q9H0M4 648 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 VCX3BQ9H321 246 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 VCX3AQ9NNX9 186 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 SRCAPQ6ZRS2 3230 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 ZNF233A6NK53 670 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 POC1B-GALNT4F8VUJ3 575 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 BBOX1O75936 387 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 KRT15P19012 456 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 ZNF131P52739 623 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 C4orf32Q8N8J7 132 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 NEK9Q8TD19 979 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 FAF1Q9UNN5 650 aaPredicted RBP12.86□□□□□ -0.35
HMGB1-206ENST00000405805 SLC4A7Q9Y6M7 1214 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 BCRP11274 1271 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 MYL7Q01449 175 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 KCNA1Q09470 495 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 SBK1Q52WX2 424 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 HVCN1Q96D96 273 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 REEP2Q9BRK0 252 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 DHX36Q9H2U1 1008 aaKnown RBP12.86□□□□□ -0.35
HMGB1-206ENST00000405805 MTMR4Q9NYA4 1195 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 FLT1P17948 1338 aa12.86□□□□□ -0.35
HMGB1-206ENST00000405805 SCN11AQ9UI33 1791 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 CLRN2A0PK11 232 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 GRID2IPA4D2P6 1211 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 PPFIA2O75334 1257 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 CETN2P41208 172 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 ERVK-9P63128 1117 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms