RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PPTC7Q8NI37 304 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 ZNF396Q96N95 335 aaPredicted RBP10.34□□□□□ -0.75
VPS53-203ENST00000401468 ZNF577Q9BSK1 485 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 GTF2IRD1Q9UHL9 959 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 MSRAQ9UJ68 235 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 RCOR1Q9UKL0 485 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 MTUS1Q9ULD2 1270 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 CLIC4Q9Y696 253 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 XIRP2A4UGR9 3374 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 TREHO43280 583 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PPP6R2O75170 966 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 LGALS2P05162 132 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 SUPT20HL2P0C7V6 817 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 SMIM10L2AP0DMW4 78 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 SMIM10L2BP0DMW5 78 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 CKBP12277 381 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 THPOP40225 353 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PRR20EP86478 221 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PRR20CP86479 221 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PRR20DP86480 221 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PRR20BP86481 221 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PRR20AP86496 221 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 KRT76Q01546 638 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 DNM1Q05193 864 aaKnown RBP10.33□□□□□ -0.76
VPS53-203ENST00000401468 LAMC2Q13753 1193 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PDIA5Q14554 519 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 MBTPS1Q14703 1052 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 IL17AQ16552 155 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 PKDCCQ504Y2 493 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 LRRC8DQ7L1W4 858 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 RPUSD2Q8IZ73 545 aaKnown RBP10.33□□□□□ -0.76
VPS53-203ENST00000401468 RDM1Q8NG50 284 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 ARNTL2Q8WYA1 636 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 C16orf70Q9BSU1 422 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 SLC28A3Q9HAS3 691 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 SETD4Q9NVD3 440 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 CFAP45Q9UL16 551 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 CEP131Q9UPN4 1083 aa10.33□□□□□ -0.76
VPS53-203ENST00000401468 FCF1Q9Y324 198 aaKnown RBP10.33□□□□□ -0.76
VPS53-203ENST00000401468 SRPRBQ9Y5M8 271 aaKnown RBP10.33□□□□□ -0.76
VPS53-203ENST00000401468 HAS3O00219 553 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 NOP56O00567 594 aaKnown RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 KPNA6O60684 536 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 CSPG5O95196 566 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 CCNE2O96020 404 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 F2P00734 622 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 IBSPP21815 317 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 KRT85P78386 507 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 BFSP2Q13515 415 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 TRIM71Q2Q1W2 868 aaKnown RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 LRCH2Q5VUJ6 765 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 FOXD4L5Q5VV16 416 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 ABHD15Q6UXT9 468 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS53-203ENST00000401468 SMAP1Q8IYB5 467 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 FOXD4L4Q8WXT5 416 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 TNPO1Q92973 898 aaKnown RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 GAS2L1Q99501 681 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 GPR20Q99678 358 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 TTC12Q9H892 705 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 JPH1Q9HDC5 661 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 SLC9A2Q9UBY0 812 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 FBXO2Q9UK22 296 aaPredicted RBP10.32□□□□□ -0.76
VPS53-203ENST00000401468 PCDHA12Q9UN75 941 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 EMSYQ7Z589 1322 aa10.32□□□□□ -0.76
VPS53-203ENST00000401468 TTC3P53804 2025 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 NCOR1O75376 2440 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 GSTTP1A0A1W2PQM5 241 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 H3BRB1 525 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 DDX39AO00148 427 aaKnown RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 GAS7O60861 476 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 PPFIA4O75335 1185 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 LGR5O75473 907 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 BAG4O95429 457 aaKnown RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 SELPP16109 830 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 ATP2B1P20020 1258 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 SFNP31947 248 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 JAK3P52333 1124 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 WDR5P61964 334 aaKnown RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 IGBP1P78318 339 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 TFF2Q03403 129 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 RAB30Q15771 203 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 AXDND1Q5T1B0 1012 aaPredicted RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 RUFY4Q6ZNE9 571 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 HERC6Q8IVU3 1022 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 FAM160A2Q8N612 972 aaPredicted RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 TMEM87AQ8NBN3 555 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 KCNG4Q8TDN1 519 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 AFAP1L1Q8TED9 768 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 GDPD5Q8WTR4 605 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 LEO1Q8WVC0 666 aaPredicted RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 ATP6V0A1Q93050 837 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 GJA10Q969M2 543 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 AK8Q96MA6 479 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 SDF4Q9BRK5 362 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 TEKT3Q9BXF9 490 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 SCAND2PQ9GZW5 306 aaPredicted RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 MTIF3Q9H2K0 278 aaKnown RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 UNC45AQ9H3U1 944 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 RNPEPQ9H4A4 650 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms