RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 EIF3DO15371 548 aaKnown RBP eCLIP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 TREHO43280 583 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 GAP43P17677 238 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CNGA1P29973 690 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 CTTNQ14247 550 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 EMC2Q15006 297 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 TRIM60Q495X7 471 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 XKR4Q5GH76 650 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 POTEGQ6S5H5 508 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 KRBA2Q6ZNG9 492 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 IQUBQ8NA54 791 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 TRIM9Q9C026 710 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 ELAC1Q9H777 363 aaKnown RBP7.81□□□□□ -1.16
LIMA1-202ENST00000394943 KCNH3Q9ULD8 1083 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 TRPV2Q9Y5S1 764 aa7.81□□□□□ -1.16
LIMA1-202ENST00000394943 COL4A4P53420 1690 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-202ENST00000394943 RHOBTB3O94955 611 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 IQCF3P0C7M6 154 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 PTENP60484 403 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 BFSP2Q13515 415 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 MYBPC2Q14324 1141 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 PTGISQ16647 500 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 MRPL10Q7Z7H8 261 aaKnown RBP7.8□□□□□ -1.16
LIMA1-202ENST00000394943 C7orf31Q8N865 590 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 GDF15Q99988 308 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 KIAA1024Q9UPX6 916 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 NLRC5Q86WI3 1866 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 GTPBP6O43824 516 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-202ENST00000394943 FAM189A1O60320 539 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 EFEMP2O95967 443 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 PLS3P13797 630 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 PRKCSHP14314 528 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-202ENST00000394943 SELPP16109 830 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 GLRA2P23416 452 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 KLRC1P26715 233 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 NDUFA8P51970 172 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 FBXO47Q5MNV8 452 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 UNC13DQ70J99 1090 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 TAS1R3Q7RTX0 852 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 RETREG2Q8NC44 543 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 PAGE5Q96GU1 130 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 RUSC1Q9BVN2 902 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 FAM13BQ9NYF5 915 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 CGNQ9P2M7 1197 aaKnown RBP7.8□□□□□ -1.16
LIMA1-202ENST00000394943 TFIP11Q9UBB9 837 aaKnown RBP7.8□□□□□ -1.16
LIMA1-202ENST00000394943 MYMKA6NI61 221 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 H0YCG3 227 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 MBTD1Q05BQ5 628 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 PADI6Q6TGC4 694 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 TSHZ1Q6ZSZ6 1077 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF507Q8TCN5 953 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 HERVK_113Q902F9 699 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 DRC1Q96MC2 740 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 CNTNAP2Q9UHC6 1331 aa7.8□□□□□ -1.16
LIMA1-202ENST00000394943 EFCAB14O75071 495 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 DARSP14868 501 aaKnown RBP7.79□□□□□ -1.16
LIMA1-202ENST00000394943 MARCKSP29966 332 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-202ENST00000394943 TXLNAP40222 546 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 KARSQ15046 597 aaKnown RBP7.79□□□□□ -1.16
LIMA1-202ENST00000394943 ODR4Q5SWX8 454 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 SP7Q8TDD2 431 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-202ENST00000394943 CELF4Q9BZC1 486 aaKnown RBP7.79□□□□□ -1.16
LIMA1-202ENST00000394943 C2orf40Q9H1Z8 148 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 SETD4Q9NVD3 440 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 TNRC18O15417 2968 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-202ENST00000394943 E9PMD0 336 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 MAPK13O15264 365 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 PAPLNO95428 1278 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 ITGB8P26012 769 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 UBA7P41226 1012 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 CAPSQ13938 189 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 RRAGBQ5VZM2 374 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 TRIML1Q8N9V2 468 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 ASAP3Q8TDY4 903 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 DCDC2CA8MYV0 355 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 ZBTB39O15060 712 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF623O75123 536 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 TLE2Q04725 743 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 PPP2R5AQ15172 486 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 LONRF3Q496Y0 759 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 SLC9A9Q8IVB4 645 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 TMEM161BQ8NDZ6 487 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 BSNDQ8WZ55 320 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 GBP4Q96PP9 640 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 RGS18Q9NS28 235 aa7.79□□□□□ -1.16
LIMA1-202ENST00000394943 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-202ENST00000394943 DDX39AO00148 427 aaKnown RBP7.78□□□□□ -1.16
LIMA1-202ENST00000394943 NBNO60934 754 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF202O95125 648 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 EFNA5P52803 228 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 LAMTOR4Q0VGL1 99 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 LPIN1Q14693 890 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 UTP14CQ5TAP6 766 aaKnown RBP7.78□□□□□ -1.16
LIMA1-202ENST00000394943 EFCAB12Q6NXP0 572 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 ZPBP2Q6X784 338 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 SV2BQ7L1I2 683 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 LRRC8DQ7L1W4 858 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF598Q86UK7 904 aaKnown RBP7.78□□□□□ -1.16
LIMA1-202ENST00000394943 MAP4K3Q8IVH8 894 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 TPH2Q8IWU9 490 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms