RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 APPL2Q8NEU8 664 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 IQCDQ96DY2 449 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 PAWRQ96IZ0 340 aaKnown RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 PCSK7Q16549 785 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 ZNF614Q8N883 585 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 INTS4Q96HW7 963 aaKnown RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 WRNIP1Q96S55 665 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 JPH2Q9BR39 696 aaPredicted RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 FAM213AQ9BRX8 229 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 ZNF229Q9UJW7 825 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 SCAF11Q99590 1463 aaKnown RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 NEURL1BA8MQ27 555 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 COPS2P61201 443 aa13.26□□□□□ -0.29
CHD3-203ENST00000380358 MRPL47Q9HD33 250 aaKnown RBP13.26□□□□□ -0.29
CHD3-203ENST00000380358 M0QYV0 167 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 SRP68Q9UHB9 627 aaKnown RBP13.25□□□□□ -0.29
CHD3-203ENST00000380358 PCDHGB4Q9UN71 923 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 MYO1DO94832 1006 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 GTF2H3Q13889 308 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 MORF4L2Q15014 288 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 P4HA2O15460 535 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 CHRNA3P32297 505 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 OCA2Q04671 838 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 ZNF699Q32M78 642 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 EIF3CQ99613 913 aaKnown RBP13.25□□□□□ -0.29
CHD3-203ENST00000380358 MRPL28Q13084 256 aaKnown RBP13.25□□□□□ -0.29
CHD3-203ENST00000380358 FAM83BQ5T0W9 1011 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 CCHCR1Q8TD31 782 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 KLHL11Q9NVR0 708 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 CAPN1P07384 714 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 DDX42Q86XP3 938 aaKnown RBP eCLIP13.25□□□□□ -0.29
CHD3-203ENST00000380358 RNF25Q96BH1 459 aaPredicted RBP13.25□□□□□ -0.29
CHD3-203ENST00000380358 FAM217BQ9NTX9 383 aaPredicted RBP13.25□□□□□ -0.29
CHD3-203ENST00000380358 COPEO14579 308 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 KRT7P08729 469 aa13.25□□□□□ -0.29
CHD3-203ENST00000380358 MKRN4PQ13434 485 aaPredicted RBP13.25□□□□□ -0.29
CHD3-203ENST00000380358 ZNF667Q5HYK9 610 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 FBXW10Q5XX13 1052 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 CIAPIN1Q6FI81 312 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 BTNL9Q6UXG8 535 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ASAP1Q9ULH1 1129 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 C5orf58C9J3I9 102 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 PRRG1O14668 218 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ST8SIA6P61647 398 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 MEI1Q5TIA1 1274 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ITPRIPL1Q6GPH6 555 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ARMC6Q6NXE6 501 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 SEPT5Q99719 369 aaPredicted RBP13.24□□□□□ -0.29
CHD3-203ENST00000380358 ELAC2Q9BQ52 826 aaKnown RBP13.24□□□□□ -0.29
CHD3-203ENST00000380358 MUC3BQ9H195 1237 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 CPVLQ9H3G5 476 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ANAPC7Q9UJX3 599 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ARHGEF37A1IGU5 675 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 SOWAHDA6NJG2 315 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 LMNAP02545 664 aaKnown RBP13.24□□□□□ -0.29
CHD3-203ENST00000380358 MXI1P50539 228 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 PLIN5Q00G26 463 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ALDH6A1Q02252 535 aaKnown RBP13.24□□□□□ -0.29
CHD3-203ENST00000380358 TCEA2Q15560 299 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 FSCBQ5H9T9 825 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 TMEM270Q6UE05 265 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 CHSY1Q86X52 802 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 SPATS2Q86XZ4 545 aaKnown RBP13.24□□□□□ -0.29
CHD3-203ENST00000380358 EFHBQ8N7U6 833 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 NRBP1Q9UHY1 535 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 CLDN3O15551 220 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 GNAT1P11488 350 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 UNC45AQ9H3U1 944 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 TJP2Q9UDY2 1190 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 DTNAQ9Y4J8 743 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 NCOA1Q15788 1441 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 CDC37Q16543 378 aaPredicted RBP13.24□□□□□ -0.29
CHD3-203ENST00000380358 KRT77Q7Z794 578 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 RAB42Q8N4Z0 105 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 MMP19Q99542 508 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 PARVGQ9HBI0 331 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 ACAD11Q709F0 780 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 TBC1D1Q86TI0 1168 aaPredicted RBP13.24□□□□□ -0.29
CHD3-203ENST00000380358 KIAA2013Q8IYS2 634 aa13.24□□□□□ -0.29
CHD3-203ENST00000380358 STX19Q8N4C7 294 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 PPM1NQ8N819 430 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 ZNF274Q96GC6 653 aaPredicted RBP13.23□□□□□ -0.29
CHD3-203ENST00000380358 PNKPQ96T60 521 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 PNMA3Q9UL41 463 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 PCDHA4Q9UN74 947 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 LUC7L3O95232 432 aaKnown RBP13.23□□□□□ -0.29
CHD3-203ENST00000380358 PBLDP30039 288 aaPredicted RBP13.23□□□□□ -0.29
CHD3-203ENST00000380358 SLC8A1P32418 973 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 HSPBP1Q9NZL4 362 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 MAP3K15Q6ZN16 1313 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 KIF14Q15058 1648 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 LINC00854A0A1B0GVQ3 168 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 A6NNZ2 444 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 SGSM2O43147 1006 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 PLA2G4BP0C869 781 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 GPC3P51654 580 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 ZNF235Q14590 738 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 TUBB8Q3ZCM7 444 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 NUGGCQ68CJ6 796 aa13.23□□□□□ -0.29
CHD3-203ENST00000380358 BTBD6Q96KE9 485 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms