RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 BNIP3LO60238 219 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 ARMC9Q7Z3E5 817 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 BBOF1Q8ND07 529 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 NSMCE1Q8WV22 266 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 LY9Q9HBG7 655 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 ABCA6Q8N139 1617 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 LOC102724428A0A0B4J2F2 783 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 DKC1O60832 514 aaKnown RBP eCLIP9.31□□□□□ -0.92
RTN3-202ENST00000339997 TTC4O95801 387 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 SIK1P57059 783 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 CCDC137Q6PK04 289 aaKnown RBP9.31□□□□□ -0.92
RTN3-202ENST00000339997 SLC30A5Q8TAD4 765 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 CUEDC2Q9H467 287 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 ADAM22Q9P0K1 906 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 TRPC5Q9UL62 973 aaPredicted RBP9.31□□□□□ -0.92
RTN3-202ENST00000339997 PRR36Q9H6K5 1346 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 PDE4DIPQ5VU43 2346 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 EIF3BP55884 814 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 DAB2P98082 770 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 STK4Q13043 487 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 DRAP1Q14919 205 aaPredicted RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 IL31Q6EBC2 164 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 NCAPG2Q86XI2 1143 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CDAN1Q8IWY9 1227 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CCNYL1Q8N7R7 359 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 SDCCAG3Q96C92 435 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 SPZ1Q9BXG8 430 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CCDC90BQ9GZT6 254 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CCDC68Q9H2F9 335 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 SRP68Q9UHB9 627 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 TLK1Q9UKI8 766 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 COPEO14579 308 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CDR2Q01850 454 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 ANO4Q32M45 955 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 FOXR1Q6PIV2 292 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 MAP7D3Q8IWC1 876 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 MB21D2Q8IYB1 491 aaPredicted RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 ARMC2Q8NEN0 867 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 ZIM3Q96PE6 472 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 ZCWPW1Q9H0M4 648 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 USP34Q70CQ2 3546 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 ERVK-7P63135 1459 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 TTLL1O95922 423 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 HNRNPCP07910 306 aaKnown RBP eCLIP9.3□□□□□ -0.923e-6■■■□□ 17
RTN3-202ENST00000339997 KRT10P13645 584 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CHN1P15882 459 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 HNRNPH1P31943 449 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 LSP1P33241 339 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 GPS1Q13098 491 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 EZH2Q15910 746 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 AOC3Q16853 763 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 GALNT17Q6IS24 598 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 TMEM270Q6UE05 265 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CCNI2Q6ZMN8 369 aaPredicted RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 CLEC17AQ6ZS10 378 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 CENPUQ71F23 418 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 TBC1D22AQ8WUA7 517 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 METP08581 1390 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 HAUS5O94927 633 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 EEF1DP29692 281 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 CDC25CP30307 473 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 MDH1P40925 334 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 SUSD4Q5VX71 490 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 RINT1Q6NUQ1 792 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 RSRC2Q7L4I2 434 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 NUDCD3Q8IVD9 361 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 ZBTB8OSQ8IWT0 167 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 SNRNP27Q8WVK2 155 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 FAF2Q96CS3 445 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 TMEM47Q9BQJ4 181 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 SNX12Q9UMY4 172 aa9.3□□□□□ -0.92
RTN3-202ENST00000339997 MRPL11Q9Y3B7 192 aaKnown RBP9.3□□□□□ -0.92
RTN3-202ENST00000339997 IGSF1Q8N6C5 1336 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 ZBED1O96006 694 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 NR3C1P04150 777 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 CDK8P49336 464 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 ST13P4Q8IZP2 240 aaPredicted RBP9.29□□□□□ -0.92
RTN3-202ENST00000339997 SH3RF3Q8TEJ3 882 aaPredicted RBP9.29□□□□□ -0.92
RTN3-202ENST00000339997 DEPDC1BQ8WUY9 529 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 SLC7A3Q8WY07 619 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 BTBD6Q96KE9 485 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 RNPC3Q96LT9 517 aaKnown RBP9.29□□□□□ -0.92
RTN3-202ENST00000339997 FGFR1OP2Q9NVK5 253 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 EPS15L1Q9UBC2 864 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 STK17AQ9UEE5 414 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 MARF1Q9Y4F3 1742 aaKnown RBP9.29□□□□□ -0.92
RTN3-202ENST00000339997 YEATS2Q9ULM3 1422 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 CCDC188H7C350 402 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 EIF3HO15372 352 aaKnown RBP eCLIP9.29□□□□□ -0.92
RTN3-202ENST00000339997 LRRC63Q05C16 580 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 PDIA2Q13087 525 aaKnown RBP9.29□□□□□ -0.92
RTN3-202ENST00000339997 KDELC2Q7Z4H8 507 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 RNF135Q8IUD6 432 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 NLRP4Q96MN2 994 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 SPC25Q9HBM1 224 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 STOML1Q9UBI4 398 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 HPCAL4Q9UM19 191 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 SCINQ9Y6U3 715 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 RNF103-CHMP3A0A140T963 221 aa9.29□□□□□ -0.92
RTN3-202ENST00000339997 ERVV-2B6SEH9 535 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms