RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CCDC127Q96BQ5 260 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 NEDD4P46934 1319 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 LTN1O94822 1766 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 TTC26A0AVF1 554 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 LRRN2O75325 713 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 STAG2Q8N3U4 1231 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 PRR36Q9H6K5 1346 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 SPECC1L-ADORA2AF8WAN1 911 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 MDH1P40925 334 aaKnown RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 MAPRE2Q15555 327 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 POTEAQ6S8J7 498 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 COA1Q9GZY4 146 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 HPCAL4Q9UM19 191 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 TYW5A2RUC4 315 aaKnown RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 STXBP3O00186 592 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 IGKV5-2P06315 115 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 SOX5P35711 763 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 CYP27A1Q02318 531 aa11□□□□□ -0.65
CCDC88A-202ENST00000336838 BEND6Q5SZJ8 279 aaPredicted RBP11□□□□□ -0.65
CCDC88A-202ENST00000336838 CCDC88AQ3V6T2 1871 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 GTF2IP78347 998 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ARMCX2Q7L311 632 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ANKRD13CQ8N6S4 541 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 KDM6AO15550 1401 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ZMYND10O75800 440 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 KRT16P08779 473 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 NFKBIAP25963 317 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 DARS2Q6PI48 645 aaKnown RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 TRPV6Q9H1D0 765 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 COPEO14579 308 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ACAD11Q709F0 780 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ARMC2Q8NEN0 867 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 FRMD8P1Q9BZ68 369 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 YY1AP1Q9H869 796 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 TNFAIP2Q03169 654 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 PDCLQ13371 301 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 C4orf22Q6V702 233 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ANO5Q75V66 913 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 NACA2Q9H009 215 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 MLXIPQ9HAP2 919 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 AFG3L2Q9Y4W6 797 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 VPS41P49754 854 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 FAM133BQ5BKY9 247 aaKnown RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 SHC4Q6S5L8 630 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 RNF207Q6ZRF8 634 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 WDR24Q96S15 920 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 STK33Q9BYT3 514 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 CSADQ9Y600 493 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 PEX19P40855 299 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 CDK8P49336 464 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 KRT76Q01546 638 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 CYP4F22Q6NT55 531 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 PDXDC1Q6P996 788 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 RHOT1Q8IXI2 618 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 RDH13Q8NBN7 331 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 UBN1Q9NPG3 1134 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ANKFY1Q9P2R3 1169 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 MROH1Q8NDA8 1641 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 PITPNM2Q9BZ72 1349 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 PPEF1O14829 653 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ACSL3O95573 720 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ZBED1O96006 694 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ZC3H18Q86VM9 953 aaKnown RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 MSL3Q8N5Y2 521 aaKnown RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 PDZD8Q8NEN9 1154 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 DEPDC1BQ8WUY9 529 aa10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 PUS3Q9BZE2 481 aaKnown RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 ZNF219Q9P2Y4 722 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 FBXO2Q9UK22 296 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-202ENST00000336838 GOLGA8MH3BSY2 632 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 PSMD6Q15008 389 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 TRADDQ15628 312 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 TMEM35BQ8NCS4 154 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 GIPC2Q8TF65 315 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 ERGIC2Q96RQ1 377 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 PIGSQ96S52 555 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 MTRQ99707 1265 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 STK32BQ9NY57 414 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 SLC12A6Q9UHW9 1150 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 COPB2P35606 906 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 CCNA1P78396 465 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 RCN2Q14257 317 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 FIGNQ5HY92 759 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 MAML1Q92585 1016 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 MKNK1Q9BUB5 465 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 ASNSD1Q9NWL6 643 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 KAT6AQ92794 2004 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 C3P01024 1663 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 PRELPP51888 382 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 DNAL1Q4LDG9 190 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 TTC19Q6DKK2 380 aaPredicted RBP10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 CAPRIN2Q6IMN6 1127 aaKnown RBP10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 RSBN1LQ6PCB5 846 aaPredicted RBP10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 MAEAQ7L5Y9 396 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 TBC1D10CQ8IV04 446 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 SCG3Q8WXD2 468 aaKnown RBP10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 ATP6V0A4Q9HBG4 840 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 KAZNQ674X7 775 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 CPXCR1Q8N123 301 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 SEPT9Q9UHD8 586 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms