RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 PCDHA12Q9UN75 941 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 TESPA1A2RU30 521 aaPredicted RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 DDX39AO00148 427 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 EVI5O60447 810 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 ATP6V1G2O95670 118 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 EIF2AK2P19525 551 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 STAT3P40763 770 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 GLE1Q53GS7 698 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 FASTKD5Q7L8L6 764 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 CNKSR2Q8WXI2 1034 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 OPTNQ96CV9 577 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 MPHOSPH6Q99547 160 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 ABCB11O95342 1321 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 QSER1Q2KHR3 1735 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 COL4A5P29400 1685 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 CASZ1Q86V15 1759 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 EME2A4GXA9 379 aaPredicted RBP11.82□□□□□ -0.52
LSM3-201ENST00000306024 KLHL33A6NCF5 533 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 FDX1P10109 184 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 PTPREP23469 700 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 GRIN1Q05586 938 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 AP3B2Q13367 1082 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 SNAPC2Q13487 334 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 TCP11X2Q5H9J9 407 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 RNF207Q6ZRF8 634 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 EPSTI1Q96J88 318 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 OSBPL1AQ9BXW6 950 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 ESYT2A0FGR8 921 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 NCK2O43639 380 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 IFNAR2P48551 515 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 ARHGAP4P98171 946 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 CCDC6Q16204 474 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 PPP4R3AQ6IN85 833 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 SIAH1Q8IUQ4 282 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 MMGT1Q8N4V1 131 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 SNX29Q8TEQ0 813 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 TRIM31Q9BZY9 425 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 PPP1R9AQ9ULJ8 1098 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 SYNPO2Q9UMS6 1093 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 DUSP10Q9Y6W6 482 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 ATXN2Q99700 1313 aaKnown RBP11.82□□□□□ -0.52
LSM3-201ENST00000306024 B4DLN1 442 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 TDP2O95551 362 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 POTEIP0CG38 1075 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 POTEJP0CG39 1038 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 ZRSR2Q15696 482 aaKnown RBP11.82□□□□□ -0.52
LSM3-201ENST00000306024 USP49Q70CQ1 688 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 WHAMMQ8TF30 809 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 P3H4Q92791 437 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 SYMPKQ92797 1274 aaKnown RBP11.82□□□□□ -0.52
LSM3-201ENST00000306024 L3MBTL3Q96JM7 780 aaPredicted RBP11.82□□□□□ -0.52
LSM3-201ENST00000306024 WDR18Q9BV38 432 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 NOC4LQ9BVI4 516 aaKnown RBP11.82□□□□□ -0.52
LSM3-201ENST00000306024 NUP58Q9BVL2 599 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 LACRTQ9GZZ8 138 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 PNMA3Q9UL41 463 aa11.82□□□□□ -0.52
LSM3-201ENST00000306024 SRPRBQ9Y5M8 271 aaKnown RBP11.82□□□□□ -0.52
LSM3-201ENST00000306024 PDHA1P08559 390 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 PTPAQ15257 358 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 EARS2Q5JPH6 523 aaKnown RBP11.81□□□□□ -0.52
LSM3-201ENST00000306024 ARMC3Q5W041 872 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 CSGALNACT2Q8N6G5 542 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 PIK3R5Q8WYR1 880 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 TEX13BQ9BXU2 312 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 C15orf41Q9Y2V0 281 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 ITIH6Q6UXX5 1313 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 DNM2P50570 870 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 ZNF157P51786 506 aaPredicted RBP11.81□□□□□ -0.52
LSM3-201ENST00000306024 CABP7Q86V35 215 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 OR2W6PQ8NHA6 318 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 PAGE5Q96GU1 130 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 ELAC2Q9BQ52 826 aaKnown RBP11.81□□□□□ -0.52
LSM3-201ENST00000306024 EMILIN3Q9NT22 766 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 A0A1B0GUL6 1792 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 GBP1P32455 592 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 PRPHP41219 470 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 MAGOHP61326 146 aaKnown RBP11.81□□□□□ -0.52
LSM3-201ENST00000306024 PPP2R2AP63151 447 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 AMPD3Q01432 767 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 ARID5AQ03989 594 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 FAM114A1Q8IWE2 563 aa11.81□□□□□ -0.52
LSM3-201ENST00000306024 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.81□□□□□ -0.52
LSM3-201ENST00000306024 MAGOHBQ96A72 148 aaKnown RBP11.81□□□□□ -0.52
LSM3-201ENST00000306024 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.81□□□□□ -0.52
LSM3-201ENST00000306024 FAM207AQ9NSI2 230 aaPredicted RBP11.81□□□□□ -0.52
LSM3-201ENST00000306024 CCL15-CCL14A0A0B4J2E2 113 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 GAS7O60861 476 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 EPB41P11171 864 aaKnown RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 PECAM1P16284 738 aaPredicted RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 KCTD2Q14681 263 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 CCL15Q16663 113 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 CCDC38Q502W7 563 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 MB21D1Q8N884 522 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 RMDN3Q96TC7 470 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 VCXQ9H320 206 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.8□□□□□ -0.52
LSM3-201ENST00000306024 CD44P16070 742 aaKnown RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 TOB1P50616 345 aaPredicted RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 PRPF4BQ13523 1007 aaKnown RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 TSNAXIP1Q2TAA8 658 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms