RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SPARCL1Q14515 664 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 TRIP13Q15645 432 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 BEND6Q5SZJ8 279 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 FAM133AQ8N9E0 248 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DNAAF3Q8N9W5 541 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ISCA1Q9BUE6 129 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 IL25Q9H293 177 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 TLK1Q9UKI8 766 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 KRT1P04264 644 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 PYGBP11216 843 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 TCP10Q12799 353 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 FOXD4Q12950 439 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 CDC37Q16543 378 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 RARS2Q5T160 578 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 EP400NLQ6ZTU2 488 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 UNC13DQ70J99 1090 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 MCF2L2Q86YR7 1114 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 JDP2Q8WYK2 163 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 HOOK2Q96ED9 719 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 TTC25Q96NG3 672 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 HESX1Q9UBX0 185 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ADAM21Q9UKJ8 722 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 SPATA31A3Q5VYP0 1347 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 PNMA6FA0A0J9YX94 578 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 MYO1FO00160 1098 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 RFX1P22670 979 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DYNLT1P63172 113 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 GRM4Q14833 912 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 NYAP1Q6ZVC0 841 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 PARD3BQ8TEW8 1205 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 FAM167BQ9BTA0 163 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ECT2Q9H8V3 914 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 STOML1Q9UBI4 398 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 L3MBTL1Q9Y468 752 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 LOC102724159A0A0B4J2E5 919 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 GRID2IPA4D2P6 1211 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 PWP2Q15269 919 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ARHGAP18Q8N392 663 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 KLC2Q9H0B6 622 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 UBN1Q9NPG3 1134 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ITIH6Q6UXX5 1313 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ABL1P00519 1130 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 CA4P22748 312 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 NBPF20Q3BBV1 942 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 SPDYE1Q8NFV5 336 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 CALR3Q96L12 384 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ZBTB18Q99592 522 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 LZTS1Q9Y250 596 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 SNX5Q9Y5X3 404 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 SALL3Q9BXA9 1300 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 IQANK1A0A1B0GTG1 560 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 KRT8P05787 483 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 PSMC2P35998 433 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 E4F1Q66K89 784 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 ANKRD13CQ8N6S4 541 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 OR9Q1Q8NGQ5 310 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 TEKT3Q9BXF9 490 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 A0A1W2PQC6 194 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 CERKLQ49MI3 558 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 CLEC4GQ6UXB4 293 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 LRRC37BQ96QE4 947 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 PDE6BP35913 854 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 ATP2C1P98194 919 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 NR1H3Q13133 447 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 DARS2Q6PI48 645 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 CDC26Q8NHZ8 85 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 GFM2Q969S9 779 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 EEF2KMTQ96G04 330 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 NOVA2Q9UNW9 492 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 FSCBQ5H9T9 825 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 HABP4Q5JVS0 413 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 GJA10Q969M2 543 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 TYW5A2RUC4 315 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 UBAP1LF5GYI3 381 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 BASP1P80723 227 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 CNGA3Q16281 694 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 NEUROG2Q9H2A3 272 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 COL15A1P39059 1388 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 TMEM247A6NEH6 219 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 MORF4L2Q15014 288 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 CCDC17Q96LX7 622 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 GDAQ9Y2T3 454 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 FBXO2Q9UK22 296 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 PSMD7P51665 324 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 HNRNPH2P55795 449 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 GTF2IP78347 998 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 TMPRSS15P98073 1019 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 ZYXQ15942 572 aaKnown RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 KIF9Q9HAQ2 790 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 ACTN3Q08043 901 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 IFRD2Q12894 506 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-201ENST00000295550 CATSPER3Q86XQ3 398 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 ZBTB8OSQ8IWT0 167 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 GLG1Q92896 1179 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 CLEC11AQ9Y240 323 aa10.54□□□□□ -0.72
COL6A3-201ENST00000295550 USP17L8P0C7I0 530 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 IRX1P78414 480 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 NUGGCQ68CJ6 796 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 NR1H4Q96RI1 486 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms