RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 C21orf2O43822 256 aa13.72□□□□□ -0.21
PTCD1-201ENST00000292478 GNAT1P11488 350 aa13.72□□□□□ -0.21
PTCD1-201ENST00000292478 KLC2Q9H0B6 622 aa13.72□□□□□ -0.21
PTCD1-201ENST00000292478 TOPORSQ9NS56 1045 aaPredicted RBP13.72□□□□□ -0.21
PTCD1-201ENST00000292478 TMEM260Q9NX78 707 aa13.72□□□□□ -0.21
PTCD1-201ENST00000292478 SLC16A3O15427 465 aaKnown RBP13.71□□□□□ -0.21
PTCD1-201ENST00000292478 ARL4CP56559 192 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 SLC7A5Q01650 507 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 SLC44A5Q8NCS7 719 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 BANK1Q8NDB2 785 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 CRAMP1Q96RY5 1269 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 MAP3K14Q99558 947 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 ANAPC7Q9UJX3 599 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 PPRC1Q5VV67 1664 aaKnown RBP13.71□□□□□ -0.21
PTCD1-201ENST00000292478 FAM187AA6NFU0 413 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 KLHL29Q96CT2 875 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 SLC10A4Q96EP9 437 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 INTS2Q9H0H0 1204 aaKnown RBP13.71□□□□□ -0.21
PTCD1-201ENST00000292478 USP32Q8NFA0 1604 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 PDXKO00764 312 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 EYA4O95677 639 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 SATB1Q01826 763 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 KYAT1Q16773 422 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 ANKRD20A4Q4UJ75 823 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 ANKRD20A8PQ5CZ79 823 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 ANKRD20A2Q5SQ80 823 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 ANKRD20A1Q5TYW2 823 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 KCTD17Q8N5Z5 321 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 PLAAQ9Y263 795 aa13.71□□□□□ -0.21
PTCD1-201ENST00000292478 KIAA1210Q9ULL0 1709 aa13.71□□□□□ -0.22
PTCD1-201ENST00000292478 CHRNA3P32297 505 aa13.71□□□□□ -0.22
PTCD1-201ENST00000292478 SERPINB6P35237 376 aa13.71□□□□□ -0.22
PTCD1-201ENST00000292478 SCARF1Q14162 830 aa13.71□□□□□ -0.22
PTCD1-201ENST00000292478 CC2D1AQ6P1N0 951 aaPredicted RBP13.71□□□□□ -0.22
PTCD1-201ENST00000292478 ELOA2Q8IYF1 753 aaPredicted RBP13.71□□□□□ -0.22
PTCD1-201ENST00000292478 NLRP4Q96MN2 994 aa13.71□□□□□ -0.22
PTCD1-201ENST00000292478 ZNF302Q9NR11 478 aa13.71□□□□□ -0.22
PTCD1-201ENST00000292478 PDS5AQ29RF7 1337 aaKnown RBP13.71□□□□□ -0.22
PTCD1-201ENST00000292478 ITIH6Q6UXX5 1313 aa13.71□□□□□ -0.22
PTCD1-201ENST00000292478 SNAP23O00161 211 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 KRT37O76014 449 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 BBS9Q3SYG4 887 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 MICAL1Q8TDZ2 1067 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 DHX38Q92620 1227 aaKnown RBP13.7□□□□□ -0.22
PTCD1-201ENST00000292478 OSBPL9Q96SU4 736 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 WNT8AQ9H1J5 351 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 FAM96AQ9H5X1 160 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 PLS3P13797 630 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 IGDCC4Q8TDY8 1250 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 RNF139Q8WU17 664 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 NUDCD1Q96RS6 583 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 SLITRK6Q9H5Y7 841 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 RAVER2Q9HCJ3 691 aaKnown RBP13.7□□□□□ -0.22
PTCD1-201ENST00000292478 RNF146Q9NTX7 359 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 FRMPD1Q5SYB0 1578 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 F8W8V4 182 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 TBX3O15119 743 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 CASP1P29466 404 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 CIITAP33076 1130 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 OSTNP61366 133 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 CCDC144BQ3MJ40 725 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 PDXDC1Q6P996 788 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 CNPY4Q8N129 248 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 DEPDC1BQ8WUY9 529 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.7□□□□□ -0.228e-7■■■■■ 32.7
PTCD1-201ENST00000292478 FGFR1OP2Q9NVK5 253 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 THEGQ9P2T0 379 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 TTC26A0AVF1 554 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 TARSL2A2RTX5 802 aaKnown RBP13.7□□□□□ -0.22
PTCD1-201ENST00000292478 GFPT1Q06210 699 aaPredicted RBP13.7□□□□□ -0.22
PTCD1-201ENST00000292478 BIRC2Q13490 618 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 HSP90AA5PQ58FG0 334 aa13.7□□□□□ -0.22
PTCD1-201ENST00000292478 SNRNP48Q6IEG0 339 aaKnown RBP13.7□□□□□ -0.22
PTCD1-201ENST00000292478 SRBD1Q8N5C6 995 aaKnown RBP13.7□□□□□ -0.22
PTCD1-201ENST00000292478 MAPK13O15264 365 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 SMARCA1P28370 1054 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 GCLMP48507 274 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 GPC3P51654 580 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 CACNB3P54284 484 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 COG7P83436 770 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 ZNF699Q32M78 642 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 CATSPER4Q7RTX7 472 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 PSPC1Q8WXF1 523 aaKnown RBP13.69□□□□□ -0.22
PTCD1-201ENST00000292478 EIF2AK1Q9BQI3 630 aaKnown RBP13.69□□□□□ -0.22
PTCD1-201ENST00000292478 CYP26B1Q9NR63 512 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 ANGPTL3Q9Y5C1 460 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 DENND3A2RUS2 1198 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 OPHN1O60890 802 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 SCARA5Q6ZMJ2 495 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 EEPD1Q7L9B9 569 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 C7orf25Q9BPX7 421 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 EFHD1Q9BUP0 239 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 DDX56Q9NY93 547 aaKnown RBP13.69□□□□□ -0.22
PTCD1-201ENST00000292478 IP6K2Q9UHH9 426 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 IQSEC2Q5JU85 1478 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 TAP1Q03518 808 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 SPARCL1Q14515 664 aa13.69□□□□□ -0.22
PTCD1-201ENST00000292478 TRIP13Q15645 432 aaPredicted RBP13.69□□□□□ -0.22
PTCD1-201ENST00000292478 ZKSCAN8Q15776 578 aaPredicted RBP13.69□□□□□ -0.22
PTCD1-201ENST00000292478 DSTYKQ6XUX3 929 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms