RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 STAG2Q8N3U4 1231 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 HDAC6Q9UBN7 1215 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 LDHAP00338 332 aaKnown RBP12.27□□□□□ -0.44
USP53-201ENST00000274030 ZBTB41Q5SVQ8 909 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 NFRKBQ6P4R8 1299 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 ANGPTL8Q6UXH0 198 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 CEP72Q9P209 647 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 NOC2LQ9Y3T9 749 aaKnown RBP12.27□□□□□ -0.44
USP53-201ENST00000274030 TRIM49P0CI25 452 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 TRIM49CP0CI26 452 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 ABCD1P33897 745 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 NSUN2Q08J23 767 aaKnown RBP eCLIP12.27□□□□□ -0.44
USP53-201ENST00000274030 RCSD1Q6JBY9 416 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 TBC1D1Q86TI0 1168 aaPredicted RBP12.27□□□□□ -0.44
USP53-201ENST00000274030 FMR1NBQ8N0W7 255 aaPredicted RBP12.27□□□□□ -0.44
USP53-201ENST00000274030 TMEM35BQ8NCS4 154 aa12.27□□□□□ -0.44
USP53-201ENST00000274030 MBD5Q9P267 1494 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 GSG1L2A8MUP6 293 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 ARHGEF6Q15052 776 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 CLASP1Q7Z460 1538 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 CPDO75976 1380 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 ATP8B3O60423 1300 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 PNMA6AP0CW24 399 aaPredicted RBP12.27□□□□□ -0.45
USP53-201ENST00000274030 KITP10721 976 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 EEF1B2P24534 225 aaKnown RBP12.27□□□□□ -0.45
USP53-201ENST00000274030 TMPRSS15P98073 1019 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 NCAPGQ9BPX3 1015 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 CNOT10Q9H9A5 744 aaKnown RBP12.27□□□□□ -0.45
USP53-201ENST00000274030 SYNMO15061 1565 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 IQANK1A0A1B0GTG1 560 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 FCER1AP12319 257 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 GUCY1A2P33402 732 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 NAA30Q147X3 362 aaPredicted RBP12.27□□□□□ -0.45
USP53-201ENST00000274030 CCDC144BQ3MJ40 725 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 TMEM259Q4ZIN3 620 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 ALS2CLQ60I27 953 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 TEX2Q8IWB9 1127 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 MCPH1Q8NEM0 835 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 TSPYL2Q9H2G4 693 aaPredicted RBP12.27□□□□□ -0.45
USP53-201ENST00000274030 HOXC10Q9NYD6 342 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 MOSPD1Q9UJG1 213 aa12.27□□□□□ -0.45
USP53-201ENST00000274030 KDM6BO15054 1643 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 APOEP02649 317 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 GPC5P78333 572 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 C6orf118Q5T5N4 469 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 HPS3Q969F9 1004 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 CCDC138Q96M89 665 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 ZBED2Q9BTP6 218 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 COL15A1P39059 1388 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 GOLGA8QA0A0J9YX86 632 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 GOLGA8OA6NCC3 632 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 KIF28PB7ZC32 967 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 GOLGA8NF8WBI6 632 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 HSPA4LO95757 839 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 INPP1P49441 399 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 KNOP1Q1ED39 458 aaKnown RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 LMBRD2Q68DH5 695 aaPredicted RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 NSUN6Q8TEA1 469 aaKnown RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 PITPNM3Q9BZ71 974 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 DDX47Q9H0S4 455 aaKnown RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 HACD3Q9P035 362 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 TSR3Q9UJK0 312 aaKnown RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 DRAP1Q14919 205 aaPredicted RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 SRRM1Q8IYB3 904 aaKnown RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 OTUD5Q96G74 571 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 TTC25Q96NG3 672 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 KLC2Q9H0B6 622 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 PNMA3Q9UL41 463 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 USP27XA6NNY8 438 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 ZBBXA8MT70 800 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 RASA4BC9J798 803 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 RASA4O43374 803 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 CHGBP05060 677 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 CYP19A1P11511 503 aaPredicted RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 VAMP7P51809 220 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 KPNA2P52292 529 aaKnown RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 ZNF302Q9NR11 478 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 MROH7-TTC4A0A0A0MT08 1334 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 UBE4BO95155 1302 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 CDK12Q9NYV4 1490 aaPredicted RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 HUS1O60921 280 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 CUL1Q13616 776 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 PTCH1Q13635 1447 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 ANKRD20A4Q4UJ75 823 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 ANKRD20A8PQ5CZ79 823 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 ANKRD20A2Q5SQ80 823 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 ANKRD20A1Q5TYW2 823 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 NUP85Q9BW27 656 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 VPS11Q9H270 941 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 PPARGC1AQ9UBK2 798 aaKnown RBP12.26□□□□□ -0.45
USP53-201ENST00000274030 FEM1BQ9UK73 627 aa12.26□□□□□ -0.45
USP53-201ENST00000274030 SPATA31A3Q5VYP0 1347 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 TTC26A0AVF1 554 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 M0QYV0 167 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 IPO5O00410 1097 aaKnown RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 MMEP08473 750 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 AKR1B1P15121 316 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 KIF19Q2TAC6 998 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 TTC30AQ86WT1 665 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms