RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CEP63Q96MT8 703 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 JPH2Q9BR39 696 aaPredicted RBP11.64□□□□□ -0.55
USP28-201ENST00000003302 PLCB1Q9NQ66 1216 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 SNX24Q9Y343 169 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 UBR3Q6ZT12 1888 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 DDX3YO15523 660 aaKnown RBP11.64□□□□□ -0.55
USP28-201ENST00000003302 SMARCA1P28370 1054 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 HSPA9P38646 679 aaKnown RBP11.64□□□□□ -0.55
USP28-201ENST00000003302 CERKLQ49MI3 558 aaPredicted RBP11.64□□□□□ -0.55
USP28-201ENST00000003302 KDM7AQ6ZMT4 941 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 TMC3Q7Z5M5 1100 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 IL31RAQ8NI17 732 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 MCM3P25205 808 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 ICA1Q05084 483 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 PAK2Q13177 524 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 ICE2Q659A1 982 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 MYCT1Q8N699 235 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 SLC30A5Q8TAD4 765 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 RNF25Q96BH1 459 aaPredicted RBP11.64□□□□□ -0.55
USP28-201ENST00000003302 CRAMP1Q96RY5 1269 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 SYT11Q9BT88 431 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 ISCUQ9H1K1 167 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 NRXN2Q9P2S2 1712 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 HGSO14964 777 aaPredicted RBP11.63□□□□□ -0.55
USP28-201ENST00000003302 PPP3CAQ08209 521 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 FAM228AQ86W67 206 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 ZNF622Q969S3 477 aaKnown RBP eCLIP11.63□□□□□ -0.556e-7■■■■■ 27
USP28-201ENST00000003302 CBWD1Q9BRT8 395 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 ZC3H12CQ9C0D7 883 aaKnown RBP11.63□□□□□ -0.55
USP28-201ENST00000003302 DDX20Q9UHI6 824 aaKnown RBP11.63□□□□□ -0.55
USP28-201ENST00000003302 ZBTB21Q9ULJ3 1066 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 CYP3A7-CYP3A51PA0A087WV96 503 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 TNFRSF8P28908 595 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 ACTN3Q08043 901 aaPredicted RBP11.63□□□□□ -0.55
USP28-201ENST00000003302 ADCY1Q08828 1119 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 RNF187Q5TA31 235 aaPredicted RBP11.63□□□□□ -0.55
USP28-201ENST00000003302 ALS2CLQ60I27 953 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 NSMFQ6X4W1 530 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 PRMT6Q96LA8 375 aaPredicted RBP11.63□□□□□ -0.55
USP28-201ENST00000003302 MBOAT7Q96N66 472 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 PCDHB18PQ96TA0 734 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 ADAM7Q9H2U9 754 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 DNAJC12Q9UKB3 198 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 CLRN2A0PK11 232 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 SEPT14Q6ZU15 432 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 EFCAB13Q8IY85 973 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 SPIRE2Q8WWL2 714 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 HES6Q96HZ4 224 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 HSD17B14Q9BPX1 270 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 EPN3Q9H201 632 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 SEMA4AQ9H3S1 761 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 DNM3Q9UQ16 869 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 GOLGA8IPA6NC78 632 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 GOLGA8JA6NMD2 632 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 BHMG1C9JSJ3 638 aaPredicted RBP11.63□□□□□ -0.55
USP28-201ENST00000003302 TP73O15350 636 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 C1orf220Q5T0J3 134 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 OTOP1Q7RTM1 612 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 KIRREL3Q8IZU9 778 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 LMO3Q8TAP4 145 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 PPM1EQ8WY54 764 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 CYFIP2Q96F07 1278 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 PTPN22Q9Y2R2 807 aa11.63□□□□□ -0.55
USP28-201ENST00000003302 RBBP6Q7Z6E9 1792 aaKnown RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 A0A087WUV0 522 aaPredicted RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 FGFR4P22455 802 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 INPP5BP32019 993 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 C1orf186Q6ZWK4 172 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 SLFN11Q7Z7L1 901 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 RAPGEF5Q92565 580 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 SYN2Q92777 582 aaPredicted RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 TLDC2A0PJX2 215 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 EDRF1Q3B7T1 1238 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 ZDHHC24Q6UX98 284 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 MIGA2Q7L4E1 593 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.62□□□□□ -0.557e-6■■■■□ 21.1
USP28-201ENST00000003302 ADAM33Q9BZ11 813 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 NT5C3AQ9H0P0 336 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 COL20A1Q9P218 1284 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 PRR12Q9ULL5 1215 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 SORBS3O60504 671 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 ECM2O94769 699 aaPredicted RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 CYP3A7P24462 503 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 PLTPP55058 493 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 CCDC70Q6NSX1 233 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 DHX38Q92620 1227 aaKnown RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 RBM17Q96I25 401 aaKnown RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 TOPORSQ9NS56 1045 aaPredicted RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 RABGAP1Q9Y3P9 1069 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 LY75O60449 1722 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 SPDYE3A6NKU9 549 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 PGRMC1O00264 195 aaKnown RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 OPA1O60313 960 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 PLCG2P16885 1265 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 CHRNA5P30532 468 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 GCLMP48507 274 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 SF3B2Q13435 895 aaKnown RBP11.62□□□□□ -0.55
USP28-201ENST00000003302 CTNNAL1Q9UBT7 734 aa11.62□□□□□ -0.55
USP28-201ENST00000003302 FGFR1OPO95684 399 aaKnown RBP11.61□□□□□ -0.55
USP28-201ENST00000003302 FMO5P49326 533 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms